Microarray (Gene expression analysis)

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Microarray (Gene expression analysis)

LE WE PMID CA

Microarray (Gene expression analysis)

1785

Mikroarray (Genexpressionsanalyse)

Bayesian statistics

Bioinformatics

Data base (Medicine Biology Pharmacology)

Genetics (SAGE)

Genetics (Single nucleotid polymorphism)

Imputation

Microarray (Gene expression analysis)

Ontology

RNA (MicroRNA)

Semantic Web

Sequencing (Nucleic acids)

Statistics and trial design

2008 1	Cross-study validation and combined analysis of gene expression microarray data. [17873151] Biostatistics 9(2): 333-54 (2008)
2001 2	Recent advances in DNA microarrays. [11779093] Acta Med Okayama 55(6): 319-28 (2001)
2008 3	Key issues in conducting a meta-analysis of gene expression microarray datasets. [18767902] PLoS Med 5(9): e184 (2008)
2000 4	DNA microarray technology and application. [11208413] Med Sci Monit 6(4): 796-800 (2000)
2007 5	Making a new technology work: the standardization and regulation of microarrays. [18449388] Yale J Biol Med 80(4): 165-78 (2007)
2009 6	Applications of DNA microarray in disease diagnostics. [19652509] J Microbiol Biotechnol 19(7): 635-46 (2009)
2003 7	The use of DNA microarrays to assess clinical samples: the transition from bedside to bench to bedside. [12795413] Recent Prog Horm Res 58(-): 25-53 (2003)
2004 8	DNA microarrays, a novel approach in studies of chromatin structure. [15094821] Acta Biochim Pol 51(1): 1-8 (2004)
2001 9	An introduction to DNA chips: principles, technology, applications and analysis. [11833770] Acta Biochim Pol 48(3): 615-22 (2001)
2008 10	The incredible shrinking world of DNA microarrays. [18563246] Mol Biosyst 4(7): 726-32 (2008)
2002 11	Microarray, SAGE and their applications to cardiovascular diseases. [12118936] Cell Res 12(2): 105-15 (2002)
2008 12	Clinical utility of microarrays: current status, existing challenges and future outlook. [19506735] Curr Genomics 9(7): 466-74 (2008)
2007 13	The application of single nucleotide polymorphism microarrays in cancer research. [18645599] Curr Genomics 8(4): 219-28 (2007)
2007 14	Microarray data analysis and mining approaches. [18216026] Brief Funct Genomic Proteomic 6(4): 265-81 (2007)
2007 15	Oligonucleotide microarrays: widely applied--poorly understood. [17644526] Brief Funct Genomic Proteomic 6(2): 141-8 (2007)
2006 16	Data merging for integrated microarray and proteomic analysis. [16772273] Brief Funct Genomic Proteomic 5(4): 261-72 (2006)
2003 17	Beyond expression profiling: next generation uses of high density oligonucleotide arrays. [15239943] Brief Funct Genomic Proteomic 2(1): 47-56 (2003)
2003 18	Current status and future prospects of array-based comparative genomic hybridisation. [15239942] Brief Funct Genomic Proteomic 2(1): 37-45 (2003)
2003 19	Advances in spotted microarray resources for expression profiling. [15239940] Brief Funct Genomic Proteomic 2(1): 21-30 (2003)
2003 20	Strategies for microarray analysis of limiting amounts of RNA. [15239941] Brief Funct Genomic Proteomic 2(1): 31-6 (2003)
2003 21	Resource and hardware options for microarray-based experimentation. [15239939] Brief Funct Genomic Proteomic 2(1): 7-20 (2003)
2003 22	Platform technologies for microarray analysis. [15239938] Brief Funct Genomic Proteomic 2(1): 4-6 (2003)
2001 23	Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression. [11435396] Genome Res 11(7): 1149-55 (2001)
2002 24	Statistical methods for microarray assays. [12177516] J Appl Genet 43(3): 269-78 (2002)
2002 25	DNA microarrays - a methodological breakthrough in genetics. [12080169] J Appl Genet 43(2): 123-30 (2002)
2002 26	Normalizing DNA microarray data. [11931570] Curr Issues Mol Biol 4(2): 57-64 (2002)
2009 27	Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis. [19615109] BMC Proc 3 Suppl 4(-): S1 (2009)
2002 28	Microarray analysis: a comparative approach. [12467218] Mol Cancer Ther 1(3): 237-8 (2002)
2002 29	Gene expression profiling by DNA microarray technology. [12097236] Crit Rev Oral Biol Med 13(1): 35-50 (2002)
2007 30	A perspective on DNA microarrays in pathology research and practice. [17600117] Am J Pathol 171(2): 375-85 (2007)
2000 31	Molecular profiling of clinical tissue specimens: feasibility and applications. [10751334] Am J Pathol 156(4): 1109-15 (2000)
2002 32	Practical approaches to analyzing results of microarray experiments. [12151303] Am J Respir Cell Mol Biol 27(2): 125-32 (2002)
2005 33	Microarrays: applications and pitfalls. [16286538] Arch Neurol 62(11): 1669-72 (2005)
2003 34	Application of microarrays to neurological disease. [12756130] Arch Neurol 60(5): 676-82 (2003)
2009 35	A decade of genome-wide gene expression profiling in acute myeloid leukemia: flashback and prospects. [18703705] Blood 113(2): 291-8 (2009)
2002 36	DNA microarrays: implications for cardiovascular medicine. [12364382] Circ Res 91(7): 559-64 (2002)
2008 37	Genetics and genomics: gene expression microarrays. [18838575] Circulation 118(15): 1593-7 (2008)
2004 38	In control: systematic assessment of microarray performance. [15459748] EMBO Rep 5(10): 964-9 (2004)
2002 39	Perspective: microarray technology, seeing more than spots. [12021158] Endocrinology 143(6): 1983-9 (2002)
2000 40	DNA arrays: methods and applications: report on HUGO Meeting, Tartu, Estonia, 23-26 May, 1999. [10780791] Eur J Hum Genet 8(3): 236-8 (2000)
2006 41	Design of microarray experiments for genetical genomics studies. [16888340] Genetics 174(2): 945-57 (2006)
2008 42	Boolean implication networks derived from large scale, whole genome microarray datasets. [18973690] Genome Biol 9(10): R157 (2008)
2001 43	The miracle of microarray data analysis. [11574052] Genome Biol 2(9): REPORTS4021 (2001)
2001 44	Mining mouse microarray data. [11516341] Genome Biol 2(7): REVIEWS1019 (2001)
2001 45	Microarray gene expression database: progress towards an international repository of gene expression data. [11387034] Genome Biol 2(5): REPORTS4011 (2001)
2001 46	Making sense of microarrays. [11182885] Genome Biol 2(2): REPORTS4003 (2001)
2000 47	Automation for genomics, part two: sequencers, microarrays, and future trends. [10984447] Genome Res 10(9): 1288-303 (2000)
2003 48	Microarray analysis: a novel research tool for cardiovascular scientists and physicians. [12748210] Heart 89(6): 597-604 (2003)
2003 49	Genomic microarrays in human genetic disease and cancer. [12915456] Hum Mol Genet 12 Spec No 2(-): R145-52 (2003)
2001 50	The use of microarrays in medicine. [11344848] Isr Med Assoc J 3(4): 292-6 (2001)
2001 51	DNA microarray analysis of complex biologic processes. [11316867] J Am Soc Nephrol 12(5): 1072-8 (2001)
2005 52	Editorial: studying hormonal regulation by microarrays: distinguishing the trees from the forest. [15699542] J Clin Endocrinol Metab 90(2): 1241-2 (2005)
2003 53	Experiments using microarray technology: limitations and standard operating procedures. [12904167] J Endocrinol 178(2): 195-204 (2003)
1999 54	Mutational analysis using oligonucleotide microarrays. [10528850] J Med Genet 36(10): 730-6 (1999)
2004 55	Microarray truths and consequences. [15291738] J Mol Endocrinol 33(1): 1-9 (2004)
2003 56	Primer on medical genomics. Part IX: scientific and clinical applications of DNA microarrays--multiple myeloma as a disease model. [12962165] Mayo Clin Proc 78(9): 1098-109 (2003)
2002 57	Primer on medical genomics. Part III: Microarray experiments and data analysis. [12233926] Mayo Clin Proc 77(9): 927-40 (2002)
2007 58	DNA microarrays: a powerful genomic tool for biomedical and clinical research. [17660860] Mol Med 13(9-10): 527-41 (2007)
2000 59	Application of microarray assay to nephrology. [11144001] Nephrol Dial Transplant 15 Suppl 6(-): 78-80 (2000)
2009 60	An evaluation of custom microarray applications: the oligonucleotide design challenge. [19208645] Nucleic Acids Res 37(6): 1726-39 (2009)
2000 61	From DNA biosensors to gene chips. [10931914] Nucleic Acids Res 28(16): 3011-6 (2000)
2006 62	Microarray analysis of gene expression: considerations in data mining and statistical treatment. [16554544] Physiol Genomics 25(3): 355-63 (2006)
2003 63	Microarray analysis: genome-scale hypothesis scanning. [14551912] PLoS Biol 1(1): E15 (2003)
2008 64	Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration. [18698424] PLoS One 3(8): e2965 (2008)
2004 65	Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. [15184677] Proc Natl Acad Sci U S A 101(25): 9309-14 (2004)
2009 66	MicroRNAs: critical mediators of differentiation, development and disease. [19705306] Swiss Med Wkly 139(33-34): 466-72 (2009)
2001 67	Challenges and limitations of gene expression profiling in mechanistic and predictive toxicology. [11222867] Toxicol Sci 60(1): 6-10 (2001)
2006 68	The challenges of gene expression microarrays for the study of human cancer. [16697954] Cancer Cell 9(5): 333-9 (2006)
1998 69	Gene chips: array of hope for understanding gene regulation. [9501061] Curr Biol 8(5): R171-4 (1998)
2000 70	Gene expression data analysis. [10967323] FEBS Lett 480(1): 17-24 (2000)
2000 71	Gene expression profiling: monitoring transcription and translation products using DNA microarrays and proteomics. [10967322] FEBS Lett 480(1): 2-16 (2000)
2002 72	The microarray: potential applications for ophthalmic research. [12131875] Mol Vis 8(-): 259-70 (2002)
2005 73	A conceptual and practical overview of cDNA microarray technology: implications for basic and clinical sciences. [16172747] Braz J Med Biol Res 38(10): 1543-52 (2005)
2002 74	Gene expression studies using microarrays: principles, problems, and prospects. [12443997] Adv Physiol Educ 26(1-4): 256-70 (2002)
2002 75	Cutting-edge technology. I. Global gene expression profiling using DNA microarrays. [11841989] Am J Physiol Gastrointest Liver Physiol 282(3): G397-402 (2002)
2011 76	GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets. [21365010] PLoS One 6(2): e17259 (2011)
2011 77	Contributions of the EMERALD project to assessing and improving microarray data quality. [21231919] Biotechniques 50(1): 27-31 (2011)
2008 78	A review of independent component analysis application to microarray gene expression data. [19007336] Biotechniques 45(5): 501-20 (2008)
2008 79	Statistical challenges in preprocessing in microarray experiments in cancer. [18829474] Clin Cancer Res 14(19): 5959-66 (2008)
2005 80	A Bayesian method for analysing spotted microarray data. [16420731] Brief Bioinform 6(4): 318-30 (2005)
2006 81	Normalization and quantification of differential expression in gene expression microarrays. [16772260] Brief Bioinform 7(2): 166-77 (2006)
2008 82	An overview of image-processing methods for Affymetrix GeneChips. [18057073] Brief Bioinform 9(1): 25-33 (2008)
2010 83	Comparison study of microarray meta-analysis methods. [20678237] BMC Bioinformatics 11(-): 408 (2010)
2010 84	Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database. [20698961] BMC Bioinformatics 11(-): 421 (2010)
2006 85	PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. [17176458] BMC Bioinformatics 7(-): 535 (2006)
2011 86	Integrated analysis of the heterogeneous microarray data. [21989042] BMC Bioinformatics 12 Suppl 5(-): S3 (2011)
2011 87	Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies. [21481242] BMC Bioinformatics 12(-): 92 (2011)
2008 88	Bayesian models and meta analysis for multiple tissue gene expression data following corticosteroid administration. [18755028] BMC Bioinformatics 9(-): 354 (2008)
2007 89	Novel definition files for human GeneChips based on GeneAnnot. [18005434] BMC Bioinformatics 8(-): 446 (2007)
2009 90	Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees. [19265541] BMC Bioinformatics 10(-): 77 (2009)
2007 91	Meta-analysis of several gene lists for distinct types of cancer: a simple way to reveal common prognostic markers. [17411443] BMC Bioinformatics 8(-): 118 (2007)
2007 92	A meta-data based method for DNA microarray imputation. [17394658] BMC Bioinformatics 8(-): 109 (2007)
2007 93	Bayesian meta-analysis models for microarray data: a comparative study. [17343745] BMC Bioinformatics 8(-): 80 (2007)
2009 94	A-MADMAN: annotation-based microarray data meta-analysis tool. [19563634] BMC Bioinformatics 10(-): 201 (2009)
2005 95	MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data. [16280078] BMC Bioinformatics 6(-): 268 (2005)
2008 96	MiMiR--an integrated platform for microarray data sharing, mining and analysis. [18801157] BMC Bioinformatics 9(-): 379 (2008)
2008 97	ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses. [18541053] BMC Bioinformatics 9 Suppl 6(-): S18 (2008)
2008 98	Statistical issues in the analysis of Illumina data. [18254947] BMC Bioinformatics 9(-): 85 (2008)
2008 99	Analyzing M-CSF dependent monocyte/macrophage differentiation: expression modes and meta-modes derived from an independent component analysis. [18279525] BMC Bioinformatics 9(-): 100 (2008)
2008 100	Statistical methodology for the analysis of dye-switch microarray experiments. [18271965] BMC Bioinformatics 9(-): 98 (2008)
2011 101	NCBI GEO: archive for functional genomics data sets--10 years on. [21097893] Nucleic Acids Res 39(Database issue): D1005-10 (2011)
2010 102	MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. [20513648] Nucleic Acids Res 38(Web Server issue): W228-32 (2010)
2004 103	Comprehensive comparison of six microarray technologies. [15333675] Nucleic Acids Res 32(15): e124 (2004)
2009 104	Getting started in gene expression microarray analysis. [19876380] PLoS Comput Biol 5(10): e1000543 (2009)
2006 105	A systematic comparison and evaluation of biclustering methods for gene expression data. [16500941] Bioinformatics 22(9): 1122-9 (2006)
2006 106	The MGED Ontology: a resource for semantics-based description of microarray experiments. [16428806] Bioinformatics 22(7): 866-73 (2006)
2002 107	A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. [12016052] Bioinformatics 18(4): 546-54 (2002)
2003 108	Comparisons and validation of statistical clustering techniques for microarray gene expression data. [12611800] Bioinformatics 19(4): 459-66 (2003)
2007 109	SNPchip: R classes and methods for SNP array data. [17204461] Bioinformatics 23(5): 627-8 (2007)
2009 110	Cross species analysis of microarray expression data. [19357096] Bioinformatics 25(12): 1476-83 (2009)
2009 111	Application and evaluation of automated semantic annotation of gene expression experiments. [19376825] Bioinformatics 25(12): 1543-9 (2009)
2008 112	A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments. [18204063] Bioinformatics 24(3): 374-82 (2008)
2005 113	Global gene expression profiling: a complement to conventional histopathologic analysis of neoplasia. [16301570] Vet Pathol 42(6): 735-52 (2005)
2004 114	Statistical significance threshold criteria for analysis of microarray gene expression data. [16646816] Stat Appl Genet Mol Biol 3(-): Article36 (2004)
2006 115	Combining results of microarray experiments: a rank aggregation approach. [17049026] Stat Appl Genet Mol Biol 5(-): Article15 (2006)
2008 116	Evaluating microarray-based classifiers: an overview. [19259405] Cancer Inform 6(-): 77-97 (2008)
2008 117	Bioinformatic tools for inferring functional information from plant microarray data II: Analysis beyond single gene. [18615189] Int J Plant Genomics 2008(-): 893941 (2008)
2008 118	Normalization and gene p-value estimation: issues in microarray data processing. [19812783] Bioinform Biol Insights 2(-): 291-305 (2008)
2007 119	False discovery rate paradigms for statistical analyses of microarray gene expression data. [17597936] Bioinformation 1(10): 436-46 (2007)
2009 120	Classification and error estimation for discrete data. [20436873] Curr Genomics 10(7): 446-62 (2009)
2010 121	Consensus miRNA expression profiles derived from interplatform normalization of microarray data. [19948767] RNA 16(1): 16-25 (2010)
2009 122	Real-time DNA microarrays: reality check. [19290884] Biochem Soc Trans 37(Pt 2): 471-5 (2009)
2007 123	Review of the literature examining the correlation among DNA microarray technologies. [17370338] Environ Mol Mutagen 48(5): 380-94 (2007)
2007 124	A meta-analysis of kidney microarray datasets: investigation of cytokine gene detection and correlation with rt-PCR and detection thresholds. [17397532] BMC Genomics 8(-): 88 (2007)
2008 125	A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy. [18302764] BMC Genomics 9(-): 98 (2008)
2007 126	Meta-analysis of microarray results: challenges, opportunities, and recommendations for standardization. [17651921] Gene 401(1-2): 12-8 (2007)
2011 127	Missing value imputation for gene expression data: computational techniques to recover missing data from available information. [21156727] Brief Bioinform 12(5): 498-513 (2011)
2010 128	Gene expression deconvolution in clinical samples. [21211069] Genome Med 2(12): 93 (2010)

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