Genomic and genetic analysis

Getting it right: designing microarray (and not 'microawry') comparative genomic hybridization studies for cancer research.
[17558419] Lab Invest 87(8): 737-54 (2007)

DNA fiber mapping techniques for the assembly of high-resolution physical maps.
[11457922] J Histochem Cytochem 49(8): 939-48 (2001)

The computational detection of functional nucleotide sequence motifs in the coding regions of organisms.
[18408149] Exp Biol Med (Maywood) 233(6): 665-73 (2008)

Genomic approaches that aid in the identification of transcription factor target genes.
[15337825] Exp Biol Med (Maywood) 229(8): 705-21 (2004)

Sequencing the regulatory genome.
[18598374] Genome Biol 9(6): 313 (2008)

Identification of structural aberrations in cancer by SNP array analysis.
[17666119] Genome Biol 8(7): 219 (2007)

Towards the visualization of genome activity at nanoscale dimensions.
[16515726] Genome Biol 7(1): 304 (2006)

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.
[19339662] Genome Res 19(4): 521-32 (2009)

Emerging technologies in DNA sequencing.
[16339375] Genome Res 15(12): 1767-76 (2005)

Many paths to many clones: a comparative look at high-throughput cloning methods.
[15489321] Genome Res 14(10B): 2020-8 (2004)

Automation for genomics, part one: preparation for sequencing.
[10958626] Genome Res 10(8): 1081-92 (2000)

Reading bits of genetic information: methods for single-nucleotide polymorphism analysis.
[9724323] Genome Res 8(8): 769-76 (1998)

Molecular scanning methods of mutation detection.
[2198276] J Biol Chem 265(22): 12753-6 (1990)

Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances.
[19570852] Nucleic Acids Res 37(13): 4181-93 (2009)

Options available for profiling small samples: a review of sample amplification technology when combined with microarray profiling.
[16473852] Nucleic Acids Res 34(3): 996-1014 (2006)

BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH).
[16439806] Nucleic Acids Res 34(2): 445-50 (2006)

Current methods of gene prediction, their strengths and weaknesses.
[12364589] Nucleic Acids Res 30(19): 4103-17 (2002)

Different strategies of differential display: areas of application.
[9837980] Nucleic Acids Res 26(24): 5537-43 (1998)

Beyond the sequence: cellular organization of genome function.
[17320514] Cell 128(4): 787-800 (2007)

Genome regulation by polycomb and trithorax proteins.
[17320510] Cell 128(4): 735-45 (2007)

Shared strategies in gene organization among prokaryotes and eukaryotes.
[12202031] Cell 110(4): 407-13 (2002)

A biological atlas of functional maps.
[11239391] Cell 104(3): 333-9 (2001)

Predicting biological networks from genomic data.
[18294967] FEBS Lett 582(8): 1251-8 (2008)

Identification of cancer genes by mutational profiling of tumor genomes.
[15763568] FEBS Lett 579(8): 1884-90 (2005)

Gene trap: a way to identify novel genes and unravel their biological function.
[10967330] FEBS Lett 480(1): 63-71 (2000)

Domain repertoires as a tool to derive protein recognition rules.
[10967328] FEBS Lett 480(1): 49-54 (2000)

Recent developments and future directions in computational genomics.
[10967327] FEBS Lett 480(1): 42-8 (2000)

Functional genomics by mass spectrometry.
[10967324] FEBS Lett 480(1): 25-31 (2000)

Complementary DNA sequence (EST) collections and the expression information of the human genome.
[9091306] FEBS Lett 403(3): 225-9 (1997)

The art of matchmaking: sequence alignment methods and their structural implications.
[10368278] Structure 7(1): R7-R12 (1999)

Cancer gene discovery in mouse and man.
[19285540] Biochim Biophys Acta 1796(2): 140-61 (2009)

Uncovering the complexity of transcriptomes with RNA-Seq.
[20625424] J Biomed Biotechnol 2010(-): 853916 (2010)

An overview of recent developments in genomics and associated statistical methods.
[19805447] Philos Transact A Math Phys Eng Sci 367(1906): 4313-37 (2009)

New technologies for delineating and characterizing the lipid exome: prospects for understanding familial combined hyperlipidemia.
[19023136] J Lipid Res 50 Suppl(-): S370-5 (2009)

Molecular genetic approaches to defining lipid function.
[18980944] J Lipid Res 50 Suppl(-): S305-10 (2009)

Two short children born small for gestational age with insulin-like growth factor 1 receptor haploinsufficiency illustrate the heterogeneity of its phenotype.
[19864454] J Clin Endocrinol Metab 94(12): 4717-27 (2009)

Moving forward with chemical mutagenesis in the mouse.
[14678486] J Physiol 554(Pt 1): 13-21 (2004)

High throughput gene expression profiling: a molecular approach to integrative physiology.
[14678487] J Physiol 554(Pt 1): 22-30 (2004)

Comparative genomic analysis as a tool for biological discovery.
[14678488] J Physiol 554(Pt 1): 31-9 (2004)

Identifying genes and genetic variation underlying human diseases and complex phenotypes via recombination mapping.
[14678489] J Physiol 554(Pt 1): 40-5 (2004)

Application of chromosomal substitution techniques in gene-function discovery.
[14678490] J Physiol 554(Pt 1): 46-55 (2004)

Copy neutral loss of heterozygosity: a novel chromosomal lesion in myeloid malignancies.
[20107230] Blood 115(14): 2731-9 (2010)

RNA-seq: from technology to biology.
[19859660] Cell Mol Life Sci 67(4): 569-79 (2010)

Insight into the heterogeneity of breast cancer through next-generation sequencing.
[21965338] J Clin Invest 121(10): 3810-8 (2011)

Preimplantation genetic diagnosis and chromosome analysis of blastomeres using comparative genomic hybridization.
[15569702] Hum Reprod Update 11(1): 33-41 (2005)

Use of forward genetics to discover novel regulators of NF-kappaB.
[20516132] Cold Spring Harb Perspect Biol 2(6): a001966 (2010)

The success (or not) of HUGO nomenclature.
[16707004] Genome Biol 7(5): 402 (2006)

Selection and gene duplication: a view from the genome.
[12049669] Genome Biol 3(5): reviews1012 (2002)

The gentle art of gene arrangement: the meaning of gene clusters.
[11897017] Genome Biol 3(3): COMMENT2002 (2002)

MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data.
[21284836] Genome Biol 12(2): R11 (2011)

Identifying transcriptional targets.
[15005803] Genome Biol 5(3): 210 (2004)

Comparing protein abundance and mRNA expression levels on a genomic scale.
[12952525] Genome Biol 4(9): 117 (2003)

Identifying transcribed sequences, and beyond.
[12620115] Genome Biol 4(2): 306 (2003)

Statistical tests for differential expression in cDNA microarray experiments.
[12702200] Genome Biol 4(4): 210 (2003)

Rat traps: filling the toolbox for manipulating the rat genome.
[20887642] Genome Biol 11(9): 217 (2010)

Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.
[18047696] Genome Biol 8 Suppl 1(-): S4 (2007)

Transposons as tools for enhancer trap screens in vertebrates.
[18047700] Genome Biol 8 Suppl 1(-): S8 (2007)

Technology transfer from worms and flies to vertebrates: transposition-based genome manipulations and their future perspectives.
[18047686] Genome Biol 8 Suppl 1(-): S1 (2007)

Searching genomes for ribozymes and riboswitches.
[17472738] Genome Biol 8(4): 210 (2007)

Pyrosequencing positions nucleosomes precisely.
[17601355] Genome Biol 8(6): 217 (2007)

Utilizing genotype imputation for the augmentation of sequence data.
[20543988] PLoS One 5(6): e11018 (2010)

Design considerations for massively parallel sequencing studies of complex human disease.
[21850262] PLoS One 6(8): e23221 (2011)

Enhancer identification through comparative genomics.
[17276707] Semin Cell Dev Biol 18(1): 140-52 (2007)

Fluorescence microscopy below the diffraction limit.
[19698798] Semin Cell Dev Biol 20(8): 886-93 (2009)

Quantification noise in single cell experiments.
[21745823] Nucleic Acids Res 39(18): e124 (2011)

Scanning for genomic regions subject to selective sweeps using SNP-MaP strategy.
[21382594] Genomics Proteomics Bioinformatics 8(4): 256-61 (2010)

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