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Systems biology
LE WE PMID CA
Systems biology2667Systembiologie

Bioinformatics

Data base (Medicine Biology Pharmacology)

Genetics (Methods)

Graph theoretical concepts

Hemopoiesis (BASKET)

Metabolomics

Methods of biochemical experimentation

Network medicine

Ontology

Plastid

Protein (protein binding)

Proteomics

Protists

Semantic Web

Signal transduction

Simulation of biological processes (Bioinformatics)

Synthetic biology

Systems biology

Text mining

2008  
1
Can systems biology understand pathway activation? Gene expression signatures as surrogate markers for understanding the complexity of pathway activation.
[19517027] Curr Genomics 9(5): 349-60 (2008)
2007  
2
Resources, standards and tools for systems biology.
[17942476] Brief Funct Genomic Proteomic 6(3): 240-51 (2007)
2007  
3
Computational systems biology in cancer: modeling methods and applications.
[19936081] Gene Regul Syst Bio 1(-): 91-110 (2007)
2008  
4
2004  
5
Primer on medical genomics. Part XIV: Introduction to systems biology--a new approach to understanding disease and treatment.
[15132407] Mayo Clin Proc 79(5): 651-8 (2004)
2011  
6
Systems biology in immunology: a computational modeling perspective.
[21219182] Annu Rev Immunol 29(-): 527-85 (2011)
2011  
7
Systems biology applied to vaccine and immunotherapy development.
[21933421] BMC Syst Biol 5(-): 146 (2011)
2011  
8
Computational systems biology: integration of sequence, structure, network, and dynamics.
[21689468] BMC Syst Biol 5 Suppl 1(-): S1 (2011)
2010  
9
Which metabolic pathways generate and characterize the flux space? A comparison among elementary modes, extreme pathways and minimal generators.
[20467567] J Biomed Biotechnol 2010(-): 753904 (2010)
2010  
10
Rewiring and regulation of cross-compartmentalized metabolism in protists.
[20124348] Philos Trans R Soc Lond B Biol Sci 365(1541): 831-45 (2010)
2010  
11
2010  
12
Hematopoiesis and its disorders: a systems biology approach.
[20103779] Blood 115(12): 2339-47 (2010)
2008  
13
Mathematical models in mammalian cell biology.
[18638360] Genome Biol 9(7): 316 (2008)
2010  
14
Towards a rigorous assessment of systems biology models: the DREAM3 challenges.
[20186320] PLoS One 5(2): e9202 (2010)
2009  
15
Dynamic proteomics in modeling of the living cell. Protein-protein interactions.
[20210711] Biochemistry (Mosc) 74(13): 1586-607 (2009)
2005  
16
Multiscale modeling of cardiac cellular energetics.
[16093514] Ann N Y Acad Sci 1047(-): 395-424 (2005)
2010  
17
2006  
18
Graph-based methods for analysing networks in cell biology.
[16880171] Brief Bioinform 7(3): 243-55 (2006)
2006  
19
Representing, storing and accessing molecular interaction data: a review of models and tools.
[17132622] Brief Bioinform 7(4): 331-8 (2006)
2006  
20
Understanding the computational methodologies of systems biology.
[17132621] Brief Bioinform 7(4): 315-7 (2006)
2006  
21
Application of wavelet-based tools to study the dynamics of biological processes.
[17118945] Brief Bioinform 7(4): 375-89 (2006)
2006  
22
Computational methodologies for modelling, analysis and simulation of signalling networks.
[17116646] Brief Bioinform 7(4): 339-53 (2006)
2006  
23
Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
[17107967] Brief Bioinform 7(4): 364-74 (2006)
2006  
24
Resources for integrative systems biology: from data through databases to networks and dynamic system models.
[17040977] Brief Bioinform 7(4): 318-30 (2006)
2006  
25
Mining literature for systems biology.
[17032698] Brief Bioinform 7(4): 399-406 (2006)
2006  
26
Strategies for dealing with incomplete information in the modeling of molecular interaction networks.
[17003073] Brief Bioinform 7(4): 354-63 (2006)
2006  
27
Advanced computing for systems biology.
[17000735] Brief Bioinform 7(4): 390-8 (2006)
2010  
28
SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs.
[20639523] Brief Bioinform 11(4): 394-402 (2010)
2007  
29
Protein interactions and disease: computational approaches to uncover the etiology of diseases.
[17638813] Brief Bioinform 8(5): 333-46 (2007)
2007  
30
Current progress in network research: toward reference networks for key model organisms.
[17728341] Brief Bioinform 8(5): 318-32 (2007)
2007  
31
Partial least squares: a versatile tool for the analysis of high-dimensional genomic data.
[16772269] Brief Bioinform 8(1): 32-44 (2007)
2008  
32
Building a knowledge base for systems pathology.
[19073714] Brief Bioinform 9(6): 518-31 (2008)
2007  
33
2009  
34
Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology.
[19364723] J R Soc Interface 6(36): 575-97 (2009)
2007  
35
Tools for visually exploring biological networks.
[17720984] Bioinformatics 23(20): 2651-9 (2007)
2011  
36
Whole genome network analysis of ion channels and connexins in myocardial infarction.
[21471719] Cell Physiol Biochem 27(3-4): 299-304 (2011)
2010  
37
Construction and analysis of protein-protein interaction networks.
[20334628] Autom Exp 2(1): 2 (2010)
2011  
38
Network medicine: a network-based approach to human disease.
[21164525] Nat Rev Genet 12(1): 56-68 (2011)
2008  
39
From proteomics toward systems biology: integration of different types of proteomics data into network models.
[18377721] BMB Rep 41(3): 184-93 (2008)
2008  
40
2008  
41
A review on models and algorithms for motif discovery in protein-protein interaction networks.
[18443014] Brief Funct Genomic Proteomic 7(2): 147-56 (2008)
2009  
42
Reconstruction of biochemical networks in microorganisms.
[19116616] Nat Rev Microbiol 7(2): 129-43 (2009)
2011  
43
Tools used to study how protein complexes are assembled in signaling cascades.
[22002082] Bioeng Bugs 2(5): 247-59 (2011)
2011  
44
Structural analysis of hubs in human NR-RTK network.
[21974810] Biol Direct 6(-): 49 (2011)
2008  
45
Standards and ontologies in computational systems biology.
[18793134] Essays Biochem 45(-): 211-22 (2008)
2007  
46
Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species.
[17566825] Mamm Genome 18(6-7): 402-11 (2007)
2010  
47
Computational approaches for detecting protein complexes from protein interaction networks: a survey.
[20158874] BMC Genomics 11 Suppl 1(-): S3 (2010)
2007  
48
Computational identification of cellular networks and pathways.
[17579773] Mol Biosyst 3(7): 478-82 (2007)
2011  
49
Interactomes, manufacturomes and relational biology: analogies between systems biology and manufacturing systems.
[21689427] Theor Biol Med Model 8(-): 19 (2011)
2011  
50
Review and application of group theory to molecular systems biology.
[21696623] Theor Biol Med Model 8(-): 21 (2011)
2010  
51
Computational modeling of mammalian signaling networks.
[20836022] Wiley Interdiscip Rev Syst Biol Med 2(2): 194-209 (2010)
2010  
52
Recent advances in clustering methods for protein interaction networks.
[21143777] BMC Genomics 11 Suppl 3(): S10 (2010)
2011  
53
Simulation of cellular biochemical system kinetics.
[21171044] Wiley Interdiscip Rev Syst Biol Med 3(2): 136-46 (2011)

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