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Graphs in molecular biology Huber W; Carey VJ; Long L; Falcon S; Gentleman RBMC Bioinformatics 2007[Sep]; 8 Suppl 6 (Suppl 6): S8Graph theoretical concepts are useful for the description and analysis of interactions and relationships in biological systems. We give a brief introduction into some of the concepts and their areas of application in molecular biology. We discuss software that is available through the Bioconductor project and present a simple example application to the integration of a protein-protein interaction and a co-expression network.|*Computer Graphics[MESH]|*Models, Biological[MESH]|Algorithms[MESH]|Computational Biology/*methods/*trends[MESH]|Computer Simulation[MESH]|Gene Expression Profiling/*methods[MESH]|Gene Expression Regulation/physiology[MESH]|Oligonucleotide Array Sequence Analysis/methods[MESH]|Proteome/*metabolism[MESH]|Signal Transduction/*physiology[MESH]|Transcription, Genetic/physiology[MESH] |
