Proteomics

The reverse proteomics for identification of tumor antigens.
[18050904] J Microbiol Biotechnol 17(6): 879-90 (2007)

Recent advances in chemical proteomics: exploring the post-translational proteome.
[19568795] J Chem Biol 1(1-4): 17-26 (2008)

Ultra-sensitive and quantitative characterization of proteomes.
[16880940] Mol Biosyst 2(5): 221-30 (2006)

Proteomic tools for cell biology.
[11208064] Traffic 1(10): 747-54 (2000)

Mass spectrometry-based approaches toward absolute quantitative proteomics.
[19452043] Curr Genomics 9(4): 263-74 (2008)

Mass spectrometry technologies for proteomics.
[17202122] Brief Funct Genomic Proteomic 4(4): 295-320 (2006)

Mass spectrometry-based quantitative proteomic profiling.
[15975262] Brief Funct Genomic Proteomic 4(1): 27-38 (2005)

Utilisation of proteomics datasets generated via multidimensional protein identification technology (MudPIT).
[15642190] Brief Funct Genomic Proteomic 3(3): 280-6 (2004)

Differential proteomics: an overview of gel and non-gel based approaches.
[15642186] Brief Funct Genomic Proteomic 3(3): 220-39 (2004)

Novel insights into proteomic technologies and their clinical perspective.
[19490584] Genome Med 1(5): 53 (2009)

The proteome: structure, function and evolution.
[16524832] Philos Trans R Soc Lond B Biol Sci 361(1467): 441-51 (2006)

Tissue proteomics for cancer biomarker development: laser microdissection and 2D-DIGE.
[18823585] BMB Rep 41(9): 626-34 (2008)

Exploring biochemistry and cellular biology with protein libraries.
[12921228] Curr Issues Mol Biol 5(4): 129-45 (2003)

Proteomics in pathology research.
[15311217] Lab Invest 84(10): 1227-44 (2004)

Clinical proteomics: present and future prospects.
[17077880] Clin Biochem Rev 27(2): 99-116 (2006)

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows.
[18451766] EMBO Rep 9(5): 429-34 (2008)

Proteomics in diagnostic pathology: profiling and imaging proteins directly in tissue sections.
[15466373] Am J Pathol 165(4): 1057-68 (2004)

Proteomic research: potential opportunities for clinical and physiological investigators.
[15140753] Am J Physiol Endocrinol Metab 286(6): E863-74 (2004)

Proteomics: current techniques and potential applications to lung disease.
[15187006] Am J Physiol Lung Cell Mol Physiol 287(1): L1-23 (2004)

Urine proteomics for the early diagnosis of acute glomerulonephritis: has the time come?
[17328039] Arthritis Rheum 56(3): 705-9 (2007)

Proteomics techniques and their application to hematology.
[14726377] Blood 103(10): 3624-34 (2004)

Perspective: proteomics--see "spots" run.
[12021159] Endocrinology 143(6): 1990-4 (2002)

Proteome analysis at the level of subcellular structures.
[12581199] Eur J Biochem 270(4): 589-99 (2003)

Proteomics as a tool for clinically relevant biomarker discovery and validation.
[16339745] Exp Biol Med (Maywood) 230(11): 808-17 (2005)

Proteomics of the anterior pituitary gland as a model for studying the physiology of a heterogeneous organ.
[16339743] Exp Biol Med (Maywood) 230(11): 793-9 (2005)

A new era for proteomics research?
[19014405] Genome Biol 9(11): 325 (2008)

Defining the proteome.
[16356278] Genome Biol 6(12): 360 (2005)

Phosphoproteomics: new insights into cellular signaling.
[16168091] Genome Biol 6(9): 230 (2005)

Is mass spectrometry ready for proteome-wide protein expression analysis?
[12186637] Genome Biol 3(8): COMMENT2008 (2002)

Functional proteomics: large-scale analysis of protein kinase activity.
[11182893] Genome Biol 2(2): REVIEWS1007 (2001)

Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Proteomics approaches to the systems biology of cardiovascular diseases.
[17065662] J Lipid Res 48(1): 1-8 (2007)

Primer on medical genomics. Part IV: Expression proteomics.
[12440555] Mayo Clin Proc 77(11): 1185-96 (2002)

Phosphoproteomics: unraveling the signaling web.
[18922462] Mol Cell 31(6): 777-81 (2008)

Proteomics in clinical trials and practice: present uses and future promise.
[16737951] Mol Cell Proteomics 5(10): 1819-29 (2006)

Metabolic labeling of proteins for proteomics.
[15849272] Mol Cell Proteomics 4(7): 857-72 (2005)

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics.
[18212004] Physiol Genomics 33(1): 18-25 (2008)

Biomarker discovery: proteome fractionation and separation in biological samples.
[18162500] Physiol Genomics 33(1): 12-7 (2008)

Methods and approaches for the comprehensive characterization and quantification of cellular proteomes using mass spectrometry.
[18162499] Physiol Genomics 33(1): 3-11 (2008)

Is proteomics the new genomics?
[17693247] Cell 130(3): 395-8 (2007)

Phosphoproteomics toolbox: computational biology, protein chemistry and mass spectrometry.
[16914146] FEBS Lett 580(20): 4764-70 (2006)

Proteomics strategies for protein identification.
[15680968] FEBS Lett 579(4): 885-9 (2005)

Miniaturized proteomics and peptidomics using capillary liquid separation and high resolution mass spectrometry.
[15165899] FEBS Lett 567(1): 92-5 (2004)

Phosphoproteomics for the masses.
[20047291] ACS Chem Biol 5(1): 105-19 (2010)

Using small molecules to dissect mechanisms of microbial pathogenesis.
[19606820] ACS Chem Biol 4(8): 603-16 (2009)

The evolving role of mass spectrometry in cancer biomarker discovery.
[19502776] Cancer Biol Ther 8(12): 1083-94 (2009)

Mass spectrometry in chronic kidney disease research.
[21044768] Adv Chronic Kidney Dis 17(6): 455-68 (2010)

Cutting-edge technology. II. Proteomics: core technologies and applications in physiology.
[11960769] Am J Physiol Gastrointest Liver Physiol 282(5): G735-41 (2002)

Mass spectrometry-based label-free quantitative proteomics.
[19911078] J Biomed Biotechnol 2010(-): 840518 (2010)

A proteomic primer for the clinician.
[17202286] Proc Am Thorac Soc 4(1): 9-17 (2007)

The effect of using an inappropriate protein database for proteomic data analysis.
[21695130] PLoS One 6(6): e20873 (2011)

Mass spectrometry-based proteomics in cell biology.
[20733050] J Cell Biol 190(4): 491-500 (2010)

Dynamic proteomics in modeling of the living cell. Protein-protein interactions.
[20210711] Biochemistry (Mosc) 74(13): 1586-607 (2009)

Mass spectrometry for proteomics.
[18718552] Curr Opin Chem Biol 12(5): 483-90 (2008)

Analysis of insoluble proteins.
[19480627] Biotechniques 46(5): 321-6 (2009)

Interactive proteomics: what lies ahead?
[18474045] Biotechniques 44(5): 681-91 (2008)

Hexapeptide combinatorial ligand libraries: the march for the detection of the low-abundance proteome continues.
[18474042] Biotechniques 44(5): 663-5 (2008)

Reproducibility in protein profiling by MALDI-TOF mass spectrometry.
[17395711] Clin Chem 53(5): 852-8 (2007)

Proteomics: a new diagnostic frontier.
[16675505] Clin Chem 52(7): 1218-22 (2006)

The MALDI-TOF mass spectrometric view of the plasma proteome and peptidome.
[16644871] Clin Chem 52(7): 1223-37 (2006)

Preanalytical influences in clinical proteomic studies: raising awareness of fundamental issues in sample banking.
[18160723] Clin Chem 54(1): 6-7 (2008)

Current trends in computational inference from mass spectrometry-based proteomics.
[17584764] Brief Bioinform 8(5): 304-17 (2007)

Visualizing meta-features in proteomic maps.
[21798033] BMC Bioinformatics 12(-): 308 (2011)

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
[17567892] BMC Bioinformatics 8(-): 197 (2007)

MALDI Imaging Mass Spectrometry (MALDI-IMS)-Application of Spatial Proteomics for Ovarian Cancer Classification and Diagnosis.
[21340013] Int J Mol Sci 12(1): 773-94 (2011)

Application of proteomics in biomarker discovery: a primer for the clinician.
[19929137] Physiol Res 59(4): 471-97 (2010)

Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors.
[17101441] Methods 40(4): 303-11 (2006)

Proteomics for biomarker discovery in acute kidney injury.
[18061846] Semin Nephrol 27(6): 637-51 (2007)

Introduction to computational proteomics.
[17676979] PLoS Comput Biol 3(7): e114 (2007)

Identification of proteomic changes during human liver development by 2D-DIGE and mass spectrometry.
[19443070] J Hepatol 51(1): 114-26 (2009)

Proteomic approaches to cancer biomarkers.
[19931265] Gastroenterology 138(1): 46-51.e1 (2010)

Applying mass spectrometry based proteomic technology to advance the understanding of multiple myeloma.
[20374647] J Hematol Oncol 3(-): 13 (2010)

Activity-based protein profiling for biochemical pathway discovery in cancer.
[20703252] Nat Rev Cancer 10(9): 630-8 (2010)

Low viscous separation media for genomics and proteomics analysis on microchip electrophoresis system.
[16595886] Biol Pharm Bull 29(4): 595-604 (2006)

The path to clinical proteomics research: integration of proteomics, genomics, clinical laboratory and regulatory science.
[21474978] Korean J Lab Med 31(2): 61-71 (2011)

Methodologies for characterizing phosphoproteins by mass spectrometry.
[17162667] Cell Commun Adhes 13(5-6): 249-62 (2006)

Analyzing shotgun proteomic data with PatternLab for proteomics.
[20521246] Curr Protoc Bioinformatics Chapter 13(-): Unit 13.13.1-15 (2010)

Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by Phosphoproteomic and Bioinformatic tools.
[21884634] J Clin Bioinforma 1(1): 16 (2011)

Highlights on the capacities of "Gel-based" proteomics.
[20426826] Proteome Sci 8(-): 23 (2010)

Quantitative phosphoproteomics by mass spectrometry: past, present, and future.
[18846511] Proteomics 8(21): 4433-43 (2008)

Proteomics data repositories.
[19795424] Proteomics 9(20): 4653-63 (2009)

Skeletal muscle proteomics: current approaches, technical challenges and emerging techniques.
[21798084] Skelet Muscle 1(1): 6 (2011)

Oxidative protein labeling in mass-spectrometry-based proteomics.
[20155254] Anal Bioanal Chem 397(8): 3441-55 (2010)

Evaluation of proteomic strategies for analyzing ubiquitinated proteins.
[18377720] BMB Rep 41(3): 177-83 (2008)

Current affairs in quantitative targeted proteomics: multiple reaction monitoring-mass spectrometry.
[19279071] Brief Funct Genomic Proteomic 8(2): 145-57 (2009)

Quantitative proteomics for drug toxicity.
[19351682] Brief Funct Genomic Proteomic 8(2): 158-66 (2009)

Quantitative proteomics: the next logical step in molecular phenotyping.
[19398504] Brief Funct Genomic Proteomic 8(2): 89 (2009)

Proteomics approaches to biomarker detection.
[15975266] Brief Funct Genomic Proteomic 4(1): 69-75 (2005)

Developments in mass spectrometry for the analysis of complex protein mixtures.
[16772276] Brief Funct Genomic Proteomic 5(2): 98-111 (2006)

Shotgun proteomics of cyanobacteria--applications of experimental and data-mining techniques.
[16772275] Brief Funct Genomic Proteomic 5(2): 121-32 (2006)

Shotgun proteomics using the iTRAQ isobaric tags.
[16772272] Brief Funct Genomic Proteomic 5(2): 112-20 (2006)

Unravelling the proteome of formalin-fixed paraffin-embedded tissue.
[16772271] Brief Funct Genomic Proteomic 5(2): 169-75 (2006)

Some views on proteomics in diabetes.
[21410413] Clin Chem Lab Med 49(6): 943-57 (2011)

Mining recent brain proteomic databases for ion channel phosphosite nuggets.
[21149544] J Gen Physiol 137(1): 3-16 (2011)

Mass-spectrometry-based clinical proteomics--a review and prospective.
[20520858] Analyst 135(8): 1830-8 (2010)

Proteomic methods for analysis of S-nitrosation.
[17360249] J Chromatogr B Analyt Technol Biomed Life Sci 851(1-2): 152-9 (2007)

Plasma membrane proteomics and its application in clinical cancer biomarker discovery.
[20382631] Mol Cell Proteomics 9(7): 1369-82 (2010)

Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.
[20445003] Mol Cell Proteomics 9(8): 1650-65 (2010)

Neuroproteomics approaches to decipher neuronal regeneration and degeneration.
[20019051] Mol Cell Proteomics 9(5): 963-75 (2010)

Immunoproteomics: Mass spectrometry-based methods to study the targets of the immune response.
[14718575] Mol Cell Proteomics 3(3): 193-208 (2004)

Proteomics of Saccharomyces cerevisiae Organelles.
[19955081] Mol Cell Proteomics 9(3): 431-45 (2010)

Multi-dimensional liquid chromatography in proteomics--a review.
[20363391] Anal Chim Acta 664(2): 101-13 (2010)

Targeted protein-omic methods are bridging the gap between proteomic and hypothesis-driven protein analysis approaches.
[21999828] Expert Rev Proteomics 8(5): 565-75 (2011)

Shotgun proteomics: concept, key points and data mining.
[20121468] Expert Rev Proteomics 7(1): 5-7 (2010)

Laser capture sampling and analytical issues in proteomics.
[17941818] Expert Rev Proteomics 4(5): 627-37 (2007)

Analysis of mouse brain peptides using mass spectrometry-based peptidomics: implications for novel functions ranging from non-classical neuropeptides to microproteins.
[20428524] Mol Biosyst 6(8): 1355-65 (2010)

Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.
[20615486] J Proteomics 73(11): 2136-46 (2010)

Application of proteomics to neutrophil biology.
[19580889] J Proteomics 73(3): 552-61 (2010)

Novel peptide identification from tandem mass spectra using ESTs and sequence database compression.
[17437027] Mol Syst Biol 3(-): 102 (2007)

Metalloproteomics: forward and reverse approaches in metalloprotein structural and functional characterization.
[21130021] Curr Opin Chem Biol 15(1): 144-8 (2011)

Phosphoproteomics in cancer.
[20937571] Mol Oncol 4(6): 482-95 (2010)

Image analysis tools and emerging algorithms for expression proteomics.
[21046614] Proteomics 10(23): 4226-57 (2010)

Proteomic analysis of acute kidney injury: biomarkers to mechanisms.
[21280238] Proteomics Clin Appl 5(1-2): 67-77 (2011)

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