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Deprecated: Implicit conversion from float 265.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Sci+Rep 2018 ; 8 (ä): ä Nephropedia Template TP
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Arylsulphatase A Pseudodeficiency (ARSA-PD), hypertension and chronic renal disease in Aboriginal Australians #MMPMID30026549
Tang D; Fakiola M; Syn G; Anderson D; Cordell HJ; Scaman ESH; Davis E; Miles SJ; McLeay T; Jamieson SE; Lassmann T; Blackwell JM
Sci Rep 2018[]; 8 (ä): ä PMID30026549show ga
Chronic renal disease (CRD) associated with cardiovascular disease (CVD) and/or type 2 diabetes (T2D) is a significant problem in Aboriginal Australians. Whole exome sequencing data (N?=?72) showed enrichment for ClinVar pathogenic variants in gene sets/pathways linking lipoprotein, lipid and glucose metabolism. The top Ingenuity Pathway Analysis canonical pathways were Farsenoid X Receptor and Retinoid Receptor (FXR/RXR; (P?=?1.86?×?10?7), Liver X Receptor and Retinoid Receptor (LXR/RXR; P?=?2.88?×?10?6), and atherosclerosis signalling (P?=?3.80?×?10?6). Top pathways/processes identified using Enrichr included: Reactome 2016 chylomicron-mediated lipid transport (P?=?3.55?×?10?7); Wiki 2016 statin (P?=?8.29?×?10?8); GO Biological Processes 2017 chylomicron remodelling (P?=?1.92?×?10?8). ClinVar arylsulfatase A pseudodeficiency (ARSA-PD) pathogenic variants were common, including the missense variant c.511?G?>?A (p.Asp171Asn; rs74315466; frequency 0.44) only reported in Polynesians. This variant is in cis with known ARSA-PD 3? regulatory c.*96?A?>?G (rs6151429; frequency 0.47) and missense c.1055?A?>?G (p.Asn352Ser; rs2071421; frequency 0.47) variants. These latter two variants are associated with T2D (risk haplotype GG; odds ratio 2.67; 95% CI 2.32?3.08; P?=?2.43?×?10?4) in genome-wide association data (N?=?402), but are more strongly associated with quantitative traits (DBP, SBP, ACR, eGFR) for hypertension and renal function in non-diabetic than diabetic subgroups. Traits associated with CVD, CRD and T2D in Aboriginal Australians provide novel insight into function of ARSA-PD variants.