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2018 ; 8
(1
): 10912
Nephropedia Template TP
gab.com Text
Twit Text FOAVip
Twit Text #
English Wikipedia
Arylsulphatase A Pseudodeficiency (ARSA-PD), hypertension and chronic renal
disease in Aboriginal Australians
#MMPMID30026549
Tang D
; Fakiola M
; Syn G
; Anderson D
; Cordell HJ
; Scaman ESH
; Davis E
; Miles SJ
; McLeay T
; Jamieson SE
; Lassmann T
; Blackwell JM
Sci Rep
2018[Jul]; 8
(1
): 10912
PMID30026549
show ga
Chronic renal disease (CRD) associated with cardiovascular disease (CVD) and/or
type 2 diabetes (T2D) is a significant problem in Aboriginal Australians. Whole
exome sequencing data (N?=?72) showed enrichment for ClinVar pathogenic variants
in gene sets/pathways linking lipoprotein, lipid and glucose metabolism. The top
Ingenuity Pathway Analysis canonical pathways were Farsenoid X Receptor and
Retinoid Receptor (FXR/RXR; (P?=?1.86?×?10(-7)), Liver X Receptor and Retinoid
Receptor (LXR/RXR; P?=?2.88?×?10(-6)), and atherosclerosis signalling
(P?=?3.80?×?10(-6)). Top pathways/processes identified using Enrichr included:
Reactome 2016 chylomicron-mediated lipid transport (P?=?3.55?×?10(-7)); Wiki 2016
statin (P?=?8.29?×?10(-8)); GO Biological Processes 2017 chylomicron remodelling
(P?=?1.92?×?10(-8)). ClinVar arylsulfatase A pseudodeficiency (ARSA-PD)
pathogenic variants were common, including the missense variant c.511?G?>?A
(p.Asp171Asn; rs74315466; frequency 0.44) only reported in Polynesians. This
variant is in cis with known ARSA-PD 3' regulatory c.*96?A?>?G (rs6151429;
frequency 0.47) and missense c.1055?A?>?G (p.Asn352Ser; rs2071421; frequency
0.47) variants. These latter two variants are associated with T2D (risk haplotype
GG; odds ratio 2.67; 95% CI 2.32-3.08; P?=?2.43?×?10(-4)) in genome-wide
association data (N?=?402), but are more strongly associated with quantitative
traits (DBP, SBP, ACR, eGFR) for hypertension and renal function in non-diabetic
than diabetic subgroups. Traits associated with CVD, CRD and T2D in Aboriginal
Australians provide novel insight into function of ARSA-PD variants.