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Freiburg RNA tools: a central online resource for RNA-focused research and teaching #MMPMID29788132
Raden M; Ali SM; Alkhnbashi OS; Busch A; Costa F; Davis JA; Eggenhofer F; Gelhausen R; Georg J; Heyne S; Hiller M; Kundu K; Kleinkauf R; Lott SC; Mohamed MM; Mattheis A; Miladi M; Richter AS; Will S; Wolff J; Wright PR; Backofen R
Nucleic Acids Res 2018[Jul]; 46 (Web Server issue): W25-9 PMID29788132show ga
The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http://rna.informatik.uni-freiburg.de.