Deprecated: Implicit conversion from float 229.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 229.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534
Deprecated: Implicit conversion from float 229.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Bioinformatics 2017 ; 33 (14): 2202-4 Nephropedia Template TP
gab.com Text
Twit Text FOAVip
Twit Text #
English Wikipedia
GenomeScope: fast reference-free genome profiling from short reads #MMPMID28369201
Vurture GW; Sedlazeck FJ; Nattestad M; Underwood CJ; Fang H; Gurtowski J; Schatz MC
Bioinformatics 2017[Jul]; 33 (14): 2202-4 PMID28369201show ga
Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose parameters for downstream analysis. We demonstrate its accuracy on 324 simulated and 16 real datasets with a wide range in genome sizes, heterozygosity levels and error rates. Availability and Implementation: http://genomescope.org, https://github.com/schatzlab/genomescope.git. Supplementary information: Supplementary data are available at Bioinformatics online.