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2016 ; 2016
(W23
): 6-12
Nephropedia Template TP
gab.com Text
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English Wikipedia
Reproducibility in Natural Language Processing: A Case Study of Two R Libraries
for Mining PubMed/MEDLINE
#MMPMID29568821
Cohen KB
; Xia J
; Roeder C
; Hunter LE
LREC Int Conf Lang Resour Eval
2016[May]; 2016
(W23
): 6-12
PMID29568821
show ga
There is currently a crisis in science related to highly publicized failures to
reproduce large numbers of published studies. The current work proposes, by way
of case studies, a methodology for moving the study of reproducibility in
computational work to a full stage beyond that of earlier work. Specifically, it
presents a case study in attempting to reproduce the reports of two R libraries
for doing text mining of the PubMed/MEDLINE repository of scientific
publications. The main findings are that a rational paradigm for reproduction of
natural language processing papers can be established; the advertised
functionality was difficult, but not impossible, to reproduce; and
reproducibility studies can produce additional insights into the functioning of
the published system. Additionally, the work on reproducibility lead to the
production of novel user-centered documentation that has been accessed 260 times
since its publication-an average of once a day per library.