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10.1186/s13059-017-1341-9 http://scihub22266oqcxt.onion/10.1186/s13059-017-1341-9 C5664825!5664825 !29089032     free     free     free Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 267.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 267.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 267.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 267.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\29089032 .jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117       Genome+Biol 2017 ; 18 (1 ): 210 Nephropedia Template TP {{tp|p=29089032 |t=2017. New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication |pdf=|usr=}}{{29089032 }} gab.com Text New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication JO: Genome Biol http://www.kidney.de/pget.php?&tw=1&pmid=29089032 #FOAvip BACKGROUND: Transposable elements are major evolutionary forces which can cause new genome structure and species diversification. The role of transposable elements in the expansion of nucleotide-binding and leucine-rich-repeat proteins (NLRs), the major disease-resistance gene families, has been unexplored in plants. RESULTS: We report two high-quality de novo genomes (Capsicum baccatum and C. chinense) and an improved reference genome (C. annuum) for peppers. Dynamic genome rearrangements involving translocations among chromosomes 3, 5, and 9 were detected in comparison between C. baccatum and the two other peppers. The amplification of athila LTR-retrotransposons, members of the gypsy superfamily, led to genome expansion in C. baccatum. In-depth genome-wide comparison of genes and repeats unveiled that the copy numbers of NLRs were greatly increased by LTR-retrotransposon-mediated retroduplication. Moreover, retroduplicated NLRs are abundant across the angiosperms and, in most cases, are lineage-specific. CONCLUSIONS: Our study reveals that retroduplication has played key roles for the massive emergence of NLR genes including functional disease-resistance genes in pepper plants. Twit Text FOAVip New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication ????Genome Biol http://www.kidney.de/pget.php?&tw=1&pmid=29089032 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=29089032 #FOAvip English Wikipedia <ref>{{Cite pmid|29089032 }}</ref> New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication #MMPMID29089032 Kim S ; Park J ; Yeom SI ; Kim YM ; Seo E ; Kim KT ; Kim MS ; Lee JM ; Cheong K ; Shin HS ; Kim SB ; Han K ; Lee J ; Park M ; Lee HA ; Lee HY ; Lee Y ; Oh S ; Lee JH ; Choi E ; Choi E ; Lee SE ; Jeon J ; Kim H ; Choi G ; Song H ; Lee J ; Lee SC ; Kwon JK ; Lee HY ; Koo N ; Hong Y ; Kim RW ; Kang WH ; Huh JH ; Kang BC ; Yang TJ ; Lee YH ; Bennetzen JL ; Choi D Genome Biol 2017[Nov]; 18 (1 ): 210 PMID29089032 show ga BACKGROUND: Transposable elements are major evolutionary forces which can cause new genome structure and species diversification. The role of transposable elements in the expansion of nucleotide-binding and leucine-rich-repeat proteins (NLRs), the major disease-resistance gene families, has been unexplored in plants. RESULTS: We report two high-quality de novo genomes (Capsicum baccatum and C. chinense) and an improved reference genome (C. annuum) for peppers. Dynamic genome rearrangements involving translocations among chromosomes 3, 5, and 9 were detected in comparison between C. baccatum and the two other peppers. The amplification of athila LTR-retrotransposons, members of the gypsy superfamily, led to genome expansion in C. baccatum. In-depth genome-wide comparison of genes and repeats unveiled that the copy numbers of NLRs were greatly increased by LTR-retrotransposon-mediated retroduplication. Moreover, retroduplicated NLRs are abundant across the angiosperms and, in most cases, are lineage-specific. CONCLUSIONS: Our study reveals that retroduplication has played key roles for the massive emergence of NLR genes including functional disease-resistance genes in pepper plants. |*Evolution, Molecular [MESH] |*Gene Duplication [MESH] |*Genes, Plant [MESH] |Capsicum/*genetics [MESH] |Chromosomes, Plant/genetics [MESH] |Disease Resistance/*genetics [MESH] |Genetic Speciation [MESH] |Molecular Sequence Annotation [MESH] |Multigene Family [MESH] |NLR Proteins/genetics [MESH] |Open Reading Frames/genetics [MESH] |Phylogeny [MESH] |Plant Diseases/*genetics/*immunology [MESH] |Reference Standards [MESH] |Retroelements/*genetics [MESH] |Sequence Analysis, RNA [MESH] |Species Specificity [MESH]New reference genome sequences of hot pepper reveal the massive evolut(epmc).pdf DeepDyve Pubget Overpricing