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10.1186/s13059-017-1311-2

http://scihub22266oqcxt.onion/10.1186/s13059-017-1311-2
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C5606061!5606061!28927434
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suck abstract from ncbi


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pmid28927434      Genome+Biol 2017 ; 18 (ä): ä
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  • SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models #MMPMID28927434
  • Zafar H; Tzen A; Navin N; Chen K; Nakhleh L
  • Genome Biol 2017[]; 18 (ä): ä PMID28927434show ga
  • Single-cell sequencing enables the inference of tumor phylogenies that provide insights on intra-tumor heterogeneity and evolutionary trajectories. Recently introduced methods perform this task under the infinite-sites assumption, violations of which, due to chromosomal deletions and loss of heterozygosity, necessitate the development of inference methods that utilize finite-sites models. We propose a statistical inference method for tumor phylogenies from noisy single-cell sequencing data under a finite-sites model. The performance of our method on synthetic and experimental data sets from two colorectal cancer patients to trace evolutionary lineages in primary and metastatic tumors suggests that employing a finite-sites model leads to improved inference of tumor phylogenies.Electronic supplementary material: The online version of this article (doi:10.1186/s13059-017-1311-2) contains supplementary material, which is available to authorized users.
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