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Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom #MMPMID27467250
Cell Syst 2016[Jul]; 3 (1): 99-101 PMID27467250show ga
Hi-C experiments study how genomes fold in 3D, generating contact maps containing features as small as 20bp and as large as 200-Mb. Here we introduce Juicebox, a tool for exploring Hi-C and other contact map data. Juicebox allows users to zoom in and out of Hi-C maps interactively, just as a user of Google Earth might zoom in and out of a geographic map. Maps can be compared to one another, or to 1D tracks or 2D feature sets.