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10.1126/science.aah4043

http://scihub22266oqcxt.onion/10.1126/science.aah4043
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C5493203!5493203!28104891
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suck abstract from ncbi


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pmid28104891      Science 2017 ; 355 (6322): 294-8
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  • Protein Structure Determination using Metagenome sequence data #MMPMID28104891
  • Ovchinnikov S; Park H; Varghese N; Huang PS; Pavlopoulos GA; Kim DE; Kamisetty H; Kyrpides NC; Baker D
  • Science 2017[Jan]; 355 (6322): 294-8 PMID28104891show ga
  • Despite decades of work by structural biologists, there are still ~5200 protein families with unknown structure outside the range of comparative modeling. We show that Rosetta structure prediction guided by residue-residue contacts inferred from evolutionary information can accurately model proteins that belong to large families, and that metagenome sequence data more than triples the number of protein families with sufficient sequences for accurate modeling. We then integrate metagenome data, contact based structure matching and Rosetta structure calculations to generate models for 614 protein families with currently unknown structures; 206 are membrane proteins and 137 have folds not represented in the PDB. This approach provides the representative models for large protein families originally envisioned as the goal of the protein structure initiative at a fraction of the cost.
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