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2017 ; 2017
(ä): 8932583
Nephropedia Template TP
gab.com Text
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An Integrative Developmental Genomics and Systems Biology Approach to Identify an
In Vivo Sox Trio-Mediated Gene Regulatory Network in Murine Embryos
#MMPMID28630873
Lee WJ
; Chatterjee S
; Yap SP
; Lim SL
; Xing X
; Kraus P
; Sun W
; Hu X
; Sivakamasundari V
; Chan HY
; Kolatkar PR
; Prabhakar S
; Lufkin T
Biomed Res Int
2017[]; 2017
(ä): 8932583
PMID28630873
show ga
Embryogenesis is an intricate process involving multiple genes and pathways. Some
of the key transcription factors controlling specific cell types are the Sox
trio, namely, Sox5, Sox6, and Sox9, which play crucial roles in organogenesis
working in a concerted manner. Much however still needs to be learned about their
combinatorial roles during this process. A developmental genomics and systems
biology approach offers to complement the reductionist methodology of current
developmental biology and provide a more comprehensive and integrated view of the
interrelationships of complex regulatory networks that occur during
organogenesis. By combining cell type-specific transcriptome analysis and in vivo
ChIP-Seq of the Sox trio using mouse embryos, we provide evidence for the direct
control of Sox5 and Sox6 by the transcriptional trio in the murine model and by
Morpholino knockdown in zebrafish and demonstrate the novel role of Tgfb2,
Fbxl18, and Tle3 in formation of Sox5, Sox6, and Sox9 dependent tissues.
Concurrently, a complete embryonic gene regulatory network has been generated,
identifying a wide repertoire of genes involved and controlled by the Sox trio in
the intricate process of normal embryogenesis.