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2017 ; 7
(10
): ä Nephropedia Template TP
gab.com Text
Twit Text FOAVip
Twit Text #
English Wikipedia
Analysis of in vivo Interaction between RNA Binding Proteins and Their RNA
Targets by UV Cross-linking and Immunoprecipitation (CLIP) Method
#MMPMID28573168
Bielli P
; Sette C
Bio Protoc
2017[May]; 7
(10
): ä PMID28573168
show ga
RNA metabolism is tightly controlled across different tissues and developmental
stages, and its dysregulation is one of the molecular hallmarks of cancer.
Through direct binding to specific sequence element(s), RNA binding proteins
(RBPs) play a pivotal role in co- and post-transcriptional RNA regulatory events.
We have recently demonstrated that, in pancreatic cancer cells, acquisition of a
drug resistant (DR)-phenotype relied on upregulation of the polypyrimidine tract
binding protein (PTBP1), which in turn is recruited to the pyruvate kinase
pre-mRNA and favors splicing of the oncogenic PKM2 variant. Herein, we describe a
step-by-step protocol of the ultraviolet (UV) light cross-linking and
immunoprecipitation (CLIP) method to determine the direct binding of a RBP to
specific regions of its target RNAs in adherent human cell lines.