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2017 ; 8
(ä): 623
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A Practical Guide to Visualization and Statistical Analysis of R solanacearum
Infection Data Using R
#MMPMID28484483
Schandry N
Front Plant Sci
2017[]; 8
(ä): 623
PMID28484483
show ga
This paper describes and summarizes approaches for visualization and statistical
analysis using data from Ralstonia solanacearum infection experiments based on
methods and concepts that are broadly applicable. Members of the R. solanacearum
species complex cause bacterial wilt disease. Bacterial wilt is a lethal plant
disease and has been studied for over 100 years. During this time various methods
to quantify disease and different ways to analyze the generated data have been
employed. Here, I aim to provide a general background on three distinct and
commonly used measures of disease: the area under the disease progression curve,
longitudinal recordings of disease severity and host survival. I will discuss how
one can proceed with visualization, statistical analysis, and interpretation
using different datasets while revisiting the general concepts of statistical
analysis. Datasets and R code to perform all analyses discussed here are included
in the supplement.