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10.1038/ni.3706

http://scihub22266oqcxt.onion/10.1038/ni.3706
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C5395420!5395420!28288100
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suck abstract from ncbi


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pmid28288100      Nat+Immunol 2017 ; 18 (5): 573-82
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  • Epigenetic landscapes reveal transcription factors regulating CD8+ T cell differentiation #MMPMID28288100
  • Yu B; Zhang K; Milner JJ; Toma C; Chen R; Scott-Browne JP; Pereira RM; Crotty S; Chang JT; Pipkin ME; Wang W; Goldrath AW
  • Nat Immunol 2017[May]; 18 (5): 573-82 PMID28288100show ga
  • Dynamic changes in the expression of transcription factors (TFs) can influence specification of distinct CD8+ T cell fates, but the observation of equivalent expression of TF among differentially-fated precursor cells suggests additional underlying mechanisms. Here, we profiled genome-wide histone modifications, open chromatin and gene expression of naive, terminal-effector, memory-precursor and memory CD8+ T cell populations induced during the in vivo response to bacterial infection. Integration of these data suggested that TF expression and binding contributed to establishment of subset-specific enhancers during differentiation. We developed a new bioinformatics method using the PageRank algorithm to reveal novel TFs influencing the generation of effector and memory populations. The TFs YY1 and Nr3c1, both constitutively expressed during CD8+ T cell differentiation, regulated the formation of terminal-effector and memory-precursor cell-fates, respectively. Our data define the epigenetic landscape of differentiation intermediates, facilitating identification of TFs with previously unappreciated roles in CD8+ T cell differentiation.
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