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10.1073/pnas.1700766114

http://scihub22266oqcxt.onion/10.1073/pnas.1700766114
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suck abstract from ncbi


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pmid28348214
      Proc+Natl+Acad+Sci+U+S+A 2017 ; 114 (15 ): E3081-E3090
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  • Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis #MMPMID28348214
  • Ding Y ; Ploper D ; Sosa EA ; Colozza G ; Moriyama Y ; Benitez MD ; Zhang K ; Merkurjev D ; De Robertis EM
  • Proc Natl Acad Sci U S A 2017[Apr]; 114 (15 ): E3081-E3090 PMID28348214 show ga
  • The earliest event in Xenopus development is the dorsal accumulation of nuclear ?-catenin under the influence of cytoplasmic determinants displaced by fertilization. In this study, a genome-wide approach was used to examine transcription of the 43,673 genes annotated in the Xenopus laevis genome under a variety of conditions that inhibit or promote formation of the Spemann organizer signaling center. Loss of function of ?-catenin with antisense morpholinos reproducibly reduced the expression of 247 mRNAs at gastrula stage. Interestingly, only 123 ?-catenin targets were enriched on the dorsal side and defined an early dorsal ?-catenin gene signature. These genes included several previously unrecognized Spemann organizer components. Surprisingly, only 3 of these 123 genes overlapped with the late Wnt signature recently defined by two other groups using inhibition by Dkk1 mRNA or Wnt8 morpholinos, which indicates that the effects of ?-catenin/Wnt signaling in early development are exquisitely regulated by stage-dependent mechanisms. We analyzed transcriptome responses to a number of treatments in a total of 46 RNA-seq libraries. These treatments included, in addition to ?-catenin depletion, regenerating dorsal and ventral half-embryos, lithium chloride treatment, and the overexpression of Wnt8, Siamois, and Cerberus mRNAs. Only some of the early dorsal ?-catenin signature genes were activated at blastula whereas others required the induction of endomesoderm, as indicated by their inhibition by Cerberus overexpression. These comprehensive data provide a rich resource for analyzing how the dorsal and ventral regions of the embryo communicate with each other in a self-organizing vertebrate model embryo.
  • |*Gene Expression Regulation, Developmental [MESH]
  • |*Transcriptome [MESH]
  • |Amino Acid Sequence [MESH]
  • |Animals [MESH]
  • |Homeodomain Proteins/genetics/metabolism [MESH]
  • |Nodal Protein/genetics/metabolism [MESH]
  • |Organizers, Embryonic/*physiology [MESH]
  • |Sequence Homology [MESH]
  • |Wnt Proteins/genetics/metabolism [MESH]
  • |Xenopus Proteins/genetics/*metabolism [MESH]
  • |Xenopus laevis/*genetics/growth & development/metabolism [MESH]


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