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Deprecated: Implicit conversion from float 233.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 J+Am+Soc+Mass+Spectrom 2017 ; 28 (5): 803-10 Nephropedia Template TP
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Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery #MMPMID28105549
Sen KI; Tang W; Nayak S; Kil Y; Bern M; Ozoglu B; Ueberheide B; Davis D; Becker C
J Am Soc Mass Spectrom 2017[May]; 28 (5): 803-10 PMID28105549show ga
Applications of antibody de novo sequencing in the biopharmaceutical industry range from the discovery of new antibody drug candidates, to identifying reagents for research, and determining the primary structure of innovator products for biosimilar development. When murine, phage display, or patient derived monoclonal antibodies against a target of interest is available, but the cDNA or the original cell line is not, de novo protein sequencing is required to humanize and recombinantly express these antibodies, followed by in vitro and in vivo testing for functional validation. Availability of fully automated software tools for monoclonal antibody de novo sequencing enables efficient and routine analysis. Here, we present a novel method to automatically de novo sequence antibodies using mass spectrometry and the Supernovo? software. The robustness of the algorithm is demonstrated through a series of stress tests.