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10.1093/nar/gkw1163 http://scihub22266oqcxt.onion/10.1093/nar/gkw1163 C5389550!5389550 !27903902     free     free     free Warning: file_get_contents(https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=27903902 &cmd=llinks): Failed to open stream: HTTP request failed! 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Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation |pdf=|usr=}}{{27903902 }} gab.com Text Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation JO: Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=27903902 #FOAvip The genomic loci bound by the glucocorticoid receptor (GR), a hormone-activated transcription factor, show little overlap between cell types. To study the role of chromatin and sequence in specifying where GR binds, we used Bayesian modeling within the universe of accessible chromatin. Taken together, our results uncovered that although GR preferentially binds accessible chromatin, its binding is biased against accessible chromatin located at promoter regions. This bias can only be explained partially by the presence of fewer GR recognition sequences, arguing for the existence of additional mechanisms that interfere with GR binding at promoters. Therefore, we tested the role of H3K9ac, the chromatin feature with the strongest negative association with GR binding, but found that this correlation does not reflect a causative link. Finally, we find a higher percentage of promoter-proximal GR binding for genes regulated by GR across cell types than for cell type-specific target genes. Given that GR almost exclusively binds accessible chromatin, we propose that cell type-specific regulation by GR preferentially occurs via distal enhancers, whose chromatin accessibility is typically cell type-specific, whereas ubiquitous target gene regulation is more likely to result from binding to promoter regions, which are often accessible regardless of cell type examined. Twit Text FOAVip Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation ????Nucleic Acids Res http://www.kidney.de/pget.php?&tw=1&pmid=27903902 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=27903902 #FOAvip English Wikipedia <ref>{{Cite pmid|27903902 }}</ref> Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation #MMPMID27903902 Love MI ; Huska MR ; Jurk M ; Schöpflin R ; Starick SR ; Schwahn K ; Cooper SB ; Yamamoto KR ; Thomas-Chollier M ; Vingron M ; Meijsing SH Nucleic Acids Res 2017[Feb]; 45 (4 ): 1805-1819 PMID27903902 show ga The genomic loci bound by the glucocorticoid receptor (GR), a hormone-activated transcription factor, show little overlap between cell types. To study the role of chromatin and sequence in specifying where GR binds, we used Bayesian modeling within the universe of accessible chromatin. Taken together, our results uncovered that although GR preferentially binds accessible chromatin, its binding is biased against accessible chromatin located at promoter regions. This bias can only be explained partially by the presence of fewer GR recognition sequences, arguing for the existence of additional mechanisms that interfere with GR binding at promoters. Therefore, we tested the role of H3K9ac, the chromatin feature with the strongest negative association with GR binding, but found that this correlation does not reflect a causative link. Finally, we find a higher percentage of promoter-proximal GR binding for genes regulated by GR across cell types than for cell type-specific target genes. Given that GR almost exclusively binds accessible chromatin, we propose that cell type-specific regulation by GR preferentially occurs via distal enhancers, whose chromatin accessibility is typically cell type-specific, whereas ubiquitous target gene regulation is more likely to result from binding to promoter regions, which are often accessible regardless of cell type examined. |*Chromatin Assembly and Disassembly [MESH] |*Gene Expression Regulation [MESH] |Animals [MESH] |Base Sequence [MESH] |Bayes Theorem [MESH] |Binding Sites [MESH] |Cell Line [MESH] |Chromatin Immunoprecipitation [MESH] |Chromatin/*genetics/*metabolism [MESH] |Computational Biology/methods [MESH] |Genome-Wide Association Study [MESH] |Genomics [MESH] |High-Throughput Nucleotide Sequencing [MESH] |Mice [MESH] |Nucleotide Motifs [MESH] |Organ Specificity/genetics [MESH] |Promoter Regions, Genetic [MESH] |Protein Binding [MESH] |Receptors, Glucocorticoid/*metabolism [MESH]Role of the chromatin landscape and sequence in determining cell type-(epmc).pdf DeepDyve Pubget Overpricing