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10.1186/s12864-017-3501-4 http://scihub22266oqcxt.onion/10.1186/s12864-017-3501-4 C5374703!5374703!28361695     free     free     free Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534       BMC+Genomics 2017 ; 18 (Suppl 2): ä Nephropedia Template TP {{tp|p=28361695|t=2017. SILVA, RDP, Greengenes, NCBI and OTT ? how do these taxonomies compare?|pdf=|usr=}}{{28361695}} gab.com Text SILVA, RDP, Greengenes, NCBI and OTT how do these taxonomies compare JO: BMC Genomics http://www.kidney.de/pget.php?&tw=1&pmid=28361695 #FOAvip Background: A key step in microbiome sequencing analysis is read assignment to taxonomic units. This is often performed using one of four taxonomic classifications, namely SILVA, RDP, Greengenes or NCBI. It is unclear how similar these are and how to compare analysis results that are based on different taxonomies. Results: We provide a method and software for mapping taxonomic entities from one taxonomy onto another. We use it to compare the four taxonomies and the Open Tree of life Taxonomy (OTT). Conclusions: While we find that SILVA, RDP and Greengenes map well into NCBI, and all four map well into the OTT, mapping the two larger taxonomies on to the smaller ones is problematic. Electronic supplementary material: The online version of this article (doi:10.1186/s12864-017-3501-4) contains supplementary material, which is available to authorized users. Twit Text FOAVip SILVA, RDP, Greengenes, NCBI and OTT how do these taxonomies compare ????BMC Genomics http://www.kidney.de/pget.php?&tw=1&pmid=28361695 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=28361695 #FOAvip English Wikipedia <ref>{{Cite pmid|28361695}}</ref> SILVA, RDP, Greengenes, NCBI and OTT ? how do these taxonomies compare? #MMPMID28361695 Balvo?i?t? M; Huson DH BMC Genomics 2017[]; 18 (Suppl 2): ä PMID28361695show ga Background: A key step in microbiome sequencing analysis is read assignment to taxonomic units. This is often performed using one of four taxonomic classifications, namely SILVA, RDP, Greengenes or NCBI. It is unclear how similar these are and how to compare analysis results that are based on different taxonomies. Results: We provide a method and software for mapping taxonomic entities from one taxonomy onto another. We use it to compare the four taxonomies and the Open Tree of life Taxonomy (OTT). Conclusions: While we find that SILVA, RDP and Greengenes map well into NCBI, and all four map well into the OTT, mapping the two larger taxonomies on to the smaller ones is problematic. Electronic supplementary material: The online version of this article (doi:10.1186/s12864-017-3501-4) contains supplementary material, which is available to authorized users. äSILVA, RDP, Greengenes, NCBI and OTT ? how do these taxonomies compare(epmc).pdf DeepDyve Pubget Overpricing