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.jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117 Am+J+Physiol+Renal+Physiol
2017 ; 312
(3
): F533-F542
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From 20th century metabolic wall charts to 21st century systems biology: database
of mammalian metabolic enzymes
#MMPMID27974320
Corcoran CC
; Grady CR
; Pisitkun T
; Parulekar J
; Knepper MA
Am J Physiol Renal Physiol
2017[Mar]; 312
(3
): F533-F542
PMID27974320
show ga
The organization of the mammalian genome into gene subsets corresponding to
specific functional classes has provided key tools for systems biology research.
Here, we have created a web-accessible resource called the Mammalian Metabolic
Enzyme Database
(https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/MetabolicEnzymeDatabase.html)
keyed to the biochemical reactions represented on iconic metabolic pathway wall
charts created in the previous century. Overall, we have mapped 1,647 genes to
these pathways, representing ~7 percent of the protein-coding genome. To
illustrate the use of the database, we apply it to the area of kidney physiology.
In so doing, we have created an additional database (Database of Metabolic
Enzymes in Kidney Tubule Segments:
https://hpcwebapps.cit.nih.gov/ESBL/Database/MetabolicEnzymes/), mapping mRNA
abundance measurements (mined from RNA-Seq studies) for all metabolic enzymes to
each of 14 renal tubule segments. We carry out bioinformatics analysis of the
enzyme expression pattern among renal tubule segments and mine various data
sources to identify vasopressin-regulated metabolic enzymes in the renal
collecting duct.