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10.1007/s12553-016-0169-8

http://scihub22266oqcxt.onion/10.1007/s12553-016-0169-8
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C5346425!5346425!28344914
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suck abstract from ncbi


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pmid28344914      Health+Technol+(Berl) 2017 ; 7 (1): 81-8
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  • Automatic classification of histopathological diagnoses for building a large scale tissue catalogue #MMPMID28344914
  • Reihs R; Müller H; Sauer S; Zatloukal K
  • Health Technol (Berl) 2017[]; 7 (1): 81-8 PMID28344914show ga
  • In this paper an automatic classification system for pathological findings is presented. The starting point in our undertaking was a pathologic tissue collection with about 1.4 million tissue samples described by free text records over 23 years. Exploring knowledge out of this ?big data? pool is a challenging task, especially when dealing with unstructured data spanning over many years. The classification is based on an ontology-based term extraction and decision tree build with a manually curated classification system. The information extracting system is based on regular expressions and a text substitution system. We describe the generation of the decision trees by medical experts using a visual editor. Also the evaluation of the classification process with a reference data set is described. We achieved an F-Score of 89,7% for ICD-10 and an F-Score of 94,7% for ICD-O classification. For the information extraction of the tumor staging and receptors we achieved am F-Score ranging from 81,8 to 96,8%.
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