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2017 ; 6
(ä): 15
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Identification of Appropriate Housekeeping Genes for Gene Expression Analysis in
Long-term Hypoxia-treated Kidney Cells
#MMPMID28299307
Moein S
; Javanmard SH
; Abedi M
; Izadpanahi MH
; Gheisari Y
Adv Biomed Res
2017[]; 6
(ä): 15
PMID28299307
show ga
BACKGROUND: Selection of stably expressing housekeeping genes (HKGs) is a crucial
step in gene expression analysis. However, there are no universal HKGs for all
experiments, and they should be determined by each biologic condition. The aim of
this study was to detect appropriate HKGs for kidney cells cultured in long-term
hypoxia. MATERIALS AND METHODS: Based on a screening step using a microarray data
available from gene expression omnibus database, a set of candidate HKGs were
chosen to be assessed in human kidney cells cultured in hypoxic or normoxic
conditions for about 2 weeks in a time course manner. The stability of gene
expression was assessed by refFinder, a web-based tool that integrates four
computational programs (geNorm, Normfinder, BestKeeper, and the comparative ??Ct
method). RESULTS: GAPDH and ACTB were the most stable genes in hypoxia treated
cells whereas, B2M and ACTB were the best HKGs in cells cultured in normoxia.
When both hypoxia and normoxia treated cells from all time points were evaluated
together, GAPDH and ACTB equally showed the most stability. CONCLUSION: As in
relative quantification of real-time polymerase chain reaction data, the same
HKGs should be selected for all groups, we believe that GAPDH and ACTB are
suitable HKGs for studies on the effect of hypoxia on cultured kidney cells.