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10.1093/bioinformatics/btw398

http://scihub22266oqcxt.onion/10.1093/bioinformatics/btw398
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suck abstract from ncbi


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pmid27423895
      Bioinformatics 2016 ; 32 (22 ): 3495-3497
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  • TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization #MMPMID27423895
  • Kou Q ; Xun L ; Liu X
  • Bioinformatics 2016[Nov]; 32 (22 ): 3495-3497 PMID27423895 show ga
  • Top-down mass spectrometry enables the observation of whole complex proteoforms in biological samples and provides crucial information complementary to bottom-up mass spectrometry. Because of the complexity of top-down mass spectra and proteoforms, it is a challenging problem to efficiently interpret top-down tandem mass spectra in high-throughput proteome-level proteomics studies. We present TopPIC, a tool that efficiently identifies and characterizes complex proteoforms with unknown primary structure alterations, such as amino acid mutations and post-translational modifications, by searching top-down tandem mass spectra against a protein database. AVAILABILITY AND IMPLEMENTATION: http://proteomics.informatics.iupui.edu/software/toppic/ CONTACT: xwliu@iupui.eduSupplementary information: Supplementary data are available at Bioinformatics online.
  • |*Proteome [MESH]
  • |*Proteomics [MESH]
  • |Animals [MESH]
  • |Humans [MESH]
  • |Protein Processing, Post-Translational [MESH]
  • |Software [MESH]


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