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2016 ; 6
(ä): 37376
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Differential fecal microbiota are retained in broiler chicken lines divergently
selected for fatness traits
#MMPMID27876778
Hou Q
; Kwok LY
; Zheng Y
; Wang L
; Guo Z
; Zhang J
; Huang W
; Wang Y
; Leng L
; Li H
; Zhang H
Sci Rep
2016[Nov]; 6
(ä): 37376
PMID27876778
show ga
Our study combined 16S rRNA-pyrosequencing and whole genome sequencing to analyze
the fecal metagenomes of the divergently selected lean (LL) and fat (FL) line
chickens. Significant structural differences existed in both the phylogenic and
functional metagenomes between the two chicken lines. At phylum level, the FL
group had significantly less Bacteroidetes. At genus level, fourteen genera of
different relative abundance were identified, with some known short-chain fatty
acid producers (including Subdoligranulum, Butyricicoccus, Eubacterium,
Bacteroides, Blautia) and a potentially pathogenic genus (Enterococcus).
Redundancy analysis identified 190 key responsive operational taxonomic units
(OTUs) that accounted for the structural differences between the phylogenic
metagenome of the two groups. Four Cluster of Orthologous Group (COG) categories
(Amino acid transport and metabolism, E; Nucleotide transport and metabolism, F;
Coenzyme transport and metabolism, H; and Lipid transport and metabolism, I) were
overrepresented in LL samples. Fifteen differential metabolic pathways
(Biosynthesis of amino acids, Pyruvate metabolism, Nitrotoluene degradation,
Lipopolysaccharide biosynthesis, Peptidoglycan biosynthesis, Pantothenate and CoA
biosynthesis, Glycosaminoglycan degradation, Thiamine metabolism,
Phosphotransferase system, Two-component system, Bacterial secretion system,
Flagellar assembly, Bacterial chemotaxis, Ribosome, Sulfur relay system) were
identified. Our data highlighted interesting variations between the gut
metagenomes of these two chicken lines.
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