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10.1186/s13059-016-1094-x http://scihub22266oqcxt.onion/10.1186/s13059-016-1094-x C5114782!5114782 !27855707     free     free     free Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 217.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\27855707 .jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117       Genome+Biol 2016 ; 17 (1 ): 232 Nephropedia Template TP {{tp|p=27855707 |t=2016. A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes |pdf=|usr=}}{{27855707 }} gab.com Text A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes JO: Genome Biol http://www.kidney.de/pget.php?&tw=1&pmid=27855707 #FOAvip Most gene prediction methods detect coding sequences from transcriptome assemblies in the absence of closely related reference genomes. Such methods are of limited application due to high transcript fragmentation and extensive assembly errors, which may lead to redundant or false coding sequence predictions. We present inGAP-CDG, which can construct full-length and non-redundant coding sequences from unassembled transcriptomes by using a codon-based de Bruijn graph to simplify the assembly process and a machine learning-based approach to filter false positives. Compared with other methods, inGAP-CDG exhibits a significant increase in predicted coding sequence length and robustness to sequencing errors and varied read length. Twit Text FOAVip A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes ????Genome Biol http://www.kidney.de/pget.php?&tw=1&pmid=27855707 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=27855707 #FOAvip English Wikipedia <ref>{{Cite pmid|27855707 }}</ref> A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes #MMPMID27855707 Peng G ; Ji P ; Zhao F Genome Biol 2016[Nov]; 17 (1 ): 232 PMID27855707 show ga Most gene prediction methods detect coding sequences from transcriptome assemblies in the absence of closely related reference genomes. Such methods are of limited application due to high transcript fragmentation and extensive assembly errors, which may lead to redundant or false coding sequence predictions. We present inGAP-CDG, which can construct full-length and non-redundant coding sequences from unassembled transcriptomes by using a codon-based de Bruijn graph to simplify the assembly process and a machine learning-based approach to filter false positives. Compared with other methods, inGAP-CDG exhibits a significant increase in predicted coding sequence length and robustness to sequencing errors and varied read length. |*Computational Biology [MESH] |*Sequence Analysis, RNA [MESH] |*Software [MESH] |Algorithms [MESH] |Codon/genetics [MESH] |High-Throughput Nucleotide Sequencing [MESH] |Open Reading Frames [MESH] |Pancreatitis-Associated Proteins [MESH]A novel codon-based de Bruijn graph algorithm for gene construction fr(epmc).pdf DeepDyve Pubget Overpricing