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2016 ; 113
(35
): 9716-21
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Superresolution intrinsic fluorescence imaging of chromatin utilizing native,
unmodified nucleic acids for contrast
#MMPMID27535934
Dong B
; Almassalha LM
; Stypula-Cyrus Y
; Urban BE
; Chandler JE
; Nguyen TQ
; Sun C
; Zhang HF
; Backman V
Proc Natl Acad Sci U S A
2016[Aug]; 113
(35
): 9716-21
PMID27535934
show ga
Visualizing the nanoscale intracellular structures formed by nucleic acids, such
as chromatin, in nonperturbed, structurally and dynamically complex cellular
systems, will help expand our understanding of biological processes and open the
next frontier for biological discovery. Traditional superresolution techniques to
visualize subdiffractional macromolecular structures formed by nucleic acids
require exogenous labels that may perturb cell function and change the very
molecular processes they intend to study, especially at the extremely high label
densities required for superresolution. However, despite tremendous interest and
demonstrated need, label-free optical superresolution imaging of nucleotide
topology under native nonperturbing conditions has never been possible. Here we
investigate a photoswitching process of native nucleotides and present the
demonstration of subdiffraction-resolution imaging of cellular structures using
intrinsic contrast from unmodified DNA based on the principle of single-molecule
photon localization microscopy (PLM). Using DNA-PLM, we achieved nanoscopic
imaging of interphase nuclei and mitotic chromosomes, allowing a quantitative
analysis of the DNA occupancy level and a subdiffractional analysis of the
chromosomal organization. This study may pave a new way for label-free
superresolution nanoscopic imaging of macromolecular structures with nucleotide
topologies and could contribute to the development of new DNA-based contrast
agents for superresolution imaging.