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Deprecated: Implicit conversion from float 225.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Bioinformatics 2016 ; 32 (18): 2886-8 Nephropedia Template TP
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HiPub: translating PubMed and PMC texts to networks for knowledge discovery #MMPMID27485446
Lee K; Shin W; Kim B; Lee S; Choi Y; Kim S; Jeon M; Tan AC; Kang J
Bioinformatics 2016[Sep]; 32 (18): 2886-8 PMID27485446show ga
Summary: We introduce HiPub, a seamless Chrome browser plug-in that automatically recognizes, annotates and translates biomedical entities from texts into networks for knowledge discovery. Using a combination of two different named-entity recognition resources, HiPub can recognize genes, proteins, diseases, drugs, mutations and cell lines in texts, and achieve high precision and recall. HiPub extracts biomedical entity-relationships from texts to construct context-specific networks, and integrates existing network data from external databases for knowledge discovery. It allows users to add additional entities from related articles, as well as user-defined entities for discovering new and unexpected entity-relationships. HiPub provides functional enrichment analysis on the biomedical entity network, and link-outs to external resources to assist users in learning new entities and relations.Availability and Implementation: HiPub and detailed user guide are available at http://hipub.korea.ac.kr.Contact:kangj@korea.ac.kr, aikchoon.tan@ucdenver.eduSupplementary information:Supplementary data are available at Bioinformatics online.