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Deprecated: Implicit conversion from float 243.2 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 J+Mol+Biol 2016 ; 428 (6): 1091-106 Nephropedia Template TP
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Recruitment, Duplex Unwinding and Protein-Mediated Inhibition of the DEAD-box RNA Helicase Dbp2 at Actively Transcribed Chromatin #MMPMID26876600
Ma WK; Paudel BP; Xing Z; Sabath IG; Rueda D; Tran EJ
J Mol Biol 2016[Mar]; 428 (6): 1091-106 PMID26876600show ga
RNA helicases play fundamental roles in modulating RNA structures and facilitating RNA-protein (RNP) complex assembly in vivo. Previously, our laboratory demonstrated that the DEAD-box RNA helicase Dbp2 in S. cerevisiae is required to promote efficient assembly of the co-transcriptionally associated mRNA binding proteins Yra1, Nab2, and Mex67 onto poly(A) + RNA. We also found that Yra1 associates directly with Dbp2 and functions as an inhibitor of Dbp2-dependent duplex unwinding, suggestive of a cycle of unwinding and inhibition by Dbp2. To test this, we undertook a series of experiments to shed light on the order of events for Dbp2 in co-transcriptional mRNP assembly. We now show that Dbp2 is recruited to chromatin via RNA and forms a large, RNA-dependent complex with Yra1 and Mex67. Moreover, single molecule (smFRET) and bulk biochemical assays show that Yra1 inhibits unwinding in a concentration-dependent manner by preventing the association of Dbp2 with single-stranded RNA. This inhibition prevents over-accumulation of Dbp2 on mRNA and stabilization of a subset of RNA Pol II transcripts. We propose a model whereby Yra1 terminates a cycle of mRNP assembly by Dbp2.