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10.1186/s13326-016-0067-z http://scihub22266oqcxt.onion/10.1186/s13326-016-0067-z C4907002!4907002 !27296299     free     free     free Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Warning: imagejpeg(C:\Inetpub\vhosts\kidney.de\httpdocs\phplern\27296299 .jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117       J+Biomed+Semantics 2016 ; 7 (ä): 39 Nephropedia Template TP {{tp|p=27296299 |t=2016. FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation |pdf=|usr=}}{{27296299 }} gab.com Text FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation JO: J Biomed Semantics http://www.kidney.de/pget.php?&tw=1&pmid=27296299 #FOAvip BACKGROUND: Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. DESCRIPTION: We have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned "omics" areas. Using the same data format to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types. The genome browser JBrowse is used to demonstrate accessing multiple SPARQL endpoints to display genomic feature annotations, as well as protein annotations from UniProt mapped to genomic locations. CONCLUSIONS: Our ontology allows users to uniformly describe - and potentially merge - sequence annotations from multiple sources. Data sources using FALDO can prospectively be retrieved using federalised SPARQL queries against public SPARQL endpoints and/or local private triple stores. Twit Text FOAVip FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation ????J Biomed Semantics http://www.kidney.de/pget.php?&tw=1&pmid=27296299 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=27296299 #FOAvip English Wikipedia <ref>{{Cite pmid|27296299 }}</ref> FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation #MMPMID27296299 Bolleman JT ; Mungall CJ ; Strozzi F ; Baran J ; Dumontier M ; Bonnal RJ ; Buels R ; Hoehndorf R ; Fujisawa T ; Katayama T ; Cock PJ J Biomed Semantics 2016[Jun]; 7 (ä): 39 PMID27296299 show ga BACKGROUND: Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. DESCRIPTION: We have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned "omics" areas. Using the same data format to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types. The genome browser JBrowse is used to demonstrate accessing multiple SPARQL endpoints to display genomic feature annotations, as well as protein annotations from UniProt mapped to genomic locations. CONCLUSIONS: Our ontology allows users to uniformly describe - and potentially merge - sequence annotations from multiple sources. Data sources using FALDO can prospectively be retrieved using federalised SPARQL queries against public SPARQL endpoints and/or local private triple stores. |*Biological Ontologies [MESH] |*Semantics [MESH] |Databases, Genetic [MESH] |Databases, Protein [MESH] |Fuzzy Logic [MESH] |Humans [MESH] |Molecular Sequence Annotation/*standards [MESH] |Nucleotides/*genetics/*metabolism [MESH] |Proteins/*chemistry/*metabolism [MESH]FALDO: a semantic standard for describing the location of nucleotide a(epmc).pdf DeepDyve Pubget Overpricing