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10.1038/ncomms11786

http://scihub22266oqcxt.onion/10.1038/ncomms11786
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suck abstract from ncbi


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pmid27283361
      Nat+Commun 2016 ; 7 (ä): 11786
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  • Genetic dissection of mammalian ERAD through comparative haploid and CRISPR forward genetic screens #MMPMID27283361
  • Timms RT ; Menzies SA ; Tchasovnikarova IA ; Christensen LC ; Williamson JC ; Antrobus R ; Dougan G ; Ellgaard L ; Lehner PJ
  • Nat Commun 2016[Jun]; 7 (ä): 11786 PMID27283361 show ga
  • The application of forward genetic screens to cultured human cells represents a powerful method to study gene function. The repurposing of the bacterial CRISPR/Cas9 system provides an effective method to disrupt gene function in mammalian cells, and has been applied to genome-wide screens. Here, we compare the efficacy of genome-wide CRISPR/Cas9-mediated forward genetic screens versus gene-trap mutagenesis screens in haploid human cells, which represent the existing 'gold standard' method. This head-to-head comparison aimed to identify genes required for the endoplasmic reticulum-associated degradation (ERAD) of MHC class I molecules. The two approaches show high concordance (>70%), successfully identifying the majority of the known components of the canonical glycoprotein ERAD pathway. Both screens also identify a role for the uncharacterized gene TXNDC11, which we show encodes an EDEM2/3-associated disulphide reductase. Genome-wide CRISPR/Cas9-mediated screens together with haploid genetic screens provide a powerful addition to the forward genetic toolbox.
  • |*Genetic Testing [MESH]
  • |*Haploidy [MESH]
  • |Animals [MESH]
  • |CRISPR-Cas Systems/*genetics [MESH]
  • |Endoplasmic Reticulum-Associated Degradation/*genetics [MESH]
  • |Fluorescent Dyes/metabolism [MESH]
  • |Genes, Reporter [MESH]
  • |Glycoproteins/metabolism [MESH]
  • |HEK293 Cells [MESH]
  • |HeLa Cells [MESH]
  • |Histocompatibility Antigens Class I/metabolism [MESH]
  • |Humans [MESH]
  • |Mammals/*genetics [MESH]
  • |Oxidation-Reduction [MESH]
  • |Protein Binding [MESH]
  • |Protein Domains [MESH]
  • |Thioredoxins/chemistry/metabolism [MESH]


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