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2016 ; 44
(10
): 4487-503
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Discovering and understanding oncogenic gene fusions through data intensive
computational approaches
#MMPMID27105842
Latysheva NS
; Babu MM
Nucleic Acids Res
2016[Jun]; 44
(10
): 4487-503
PMID27105842
show ga
Although gene fusions have been recognized as important drivers of cancer for
decades, our understanding of the prevalence and function of gene fusions has
been revolutionized by the rise of next-generation sequencing, advances in
bioinformatics theory and an increasing capacity for large-scale computational
biology. The computational work on gene fusions has been vastly diverse, and the
present state of the literature is fragmented. It will be fruitful to merge three
camps of gene fusion bioinformatics that appear to rarely cross over: (i)
data-intensive computational work characterizing the molecular biology of gene
fusions; (ii) development research on fusion detection tools, candidate fusion
prioritization algorithms and dedicated fusion databases and (iii) clinical
research that seeks to either therapeutically target fusion transcripts and
proteins or leverages advances in detection tools to perform large-scale surveys
of gene fusion landscapes in specific cancer types. In this review, we unify
these different-yet highly complementary and symbiotic-approaches with the view
that increased synergy will catalyze advancements in gene fusion identification,
characterization and significance evaluation.