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10.1515/sagmb-2012-0057

http://scihub22266oqcxt.onion/10.1515/sagmb-2012-0057
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C4866591!4866591!23502341
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suck abstract from ncbi


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pmid23502341      Stat+Appl+Genet+Mol+Biol 2013 ; 12 (2): 189-205
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  • Detection of Epigenetic Changes Using ANOVA with Spatially Varying Coefficients #MMPMID23502341
  • Xiao G; Wang X; LaPlant Q; Nestler E; Xie Y
  • Stat Appl Genet Mol Biol 2013[May]; 12 (2): 189-205 PMID23502341show ga
  • Identification of genome-wide epigenetic changes, the stable changes in gene function without a change in DNA sequence, under various conditions plays an important role in biomedical research. High-throughput epigenetic experiments are useful tools to measure genome-wide epigenetic changes, but the measured intensity levels from these high-resolution genome-wide epigenetic profiling data are often spatially correlated with high noise levels. In addition, no formal statistical method was developed to compare genome-wide epigenetic changes across multiple conditions. In this study, we consider ANOVA models with spatially varying coefficients, combined with a hierarchical Bayes approach, to explicitly model spatial correlation caused by location-dependent biological effects (i.e., epigenetic changes) and borrow strength among neighboring probes to compare epigenetic changes across multiple conditions. Through simulation studies and applications in drug addiction and depression models, we find that our approach compares favorably with competing methods; it is more efficient in estimation and more effective in detecting epigenetic changes. In addition, it can provide biologically meaningful results.
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