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2016 ; 37
(6
): 540-548
Nephropedia Template TP
gab.com Text
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English Wikipedia
MSeqDR: A Centralized Knowledge Repository and Bioinformatics Web Resource to
Facilitate Genomic Investigations in Mitochondrial Disease
#MMPMID26919060
Shen L
; Diroma MA
; Gonzalez M
; Navarro-Gomez D
; Leipzig J
; Lott MT
; van Oven M
; Wallace DC
; Muraresku CC
; Zolkipli-Cunningham Z
; Chinnery PF
; Attimonelli M
; Zuchner S
; Falk MJ
; Gai X
Hum Mutat
2016[Jun]; 37
(6
): 540-548
PMID26919060
show ga
MSeqDR is the Mitochondrial Disease Sequence Data Resource, a centralized and
comprehensive genome and phenome bioinformatics resource built by the
mitochondrial disease community to facilitate clinical diagnosis and research
investigations of individual patient phenotypes, genomes, genes, and variants. A
central Web portal (https://mseqdr.org) integrates community knowledge from
expert-curated databases with genomic and phenotype data shared by clinicians and
researchers. MSeqDR also functions as a centralized application server for
Web-based tools to analyze data across both mitochondrial and nuclear DNA,
including investigator-driven whole exome or genome dataset analyses through
MSeqDR-Genesis. MSeqDR-GBrowse genome browser supports interactive genomic data
exploration and visualization with custom tracks relevant to mtDNA variation and
mitochondrial disease. MSeqDR-LSDB is a locus-specific database that currently
manages 178 mitochondrial diseases, 1,363 genes associated with mitochondrial
biology or disease, and 3,711 pathogenic variants in those genes. MSeqDR Disease
Portal allows hierarchical tree-style disease exploration to evaluate their
unique descriptions, phenotypes, and causative variants. Automated genomic data
submission tools are provided that capture ClinVar compliant variant annotations.
PhenoTips will be used for phenotypic data submission on deidentified patients
using human phenotype ontology terminology. The development of a dynamic informed
patient consent process to guide data access is underway to realize the full
potential of these resources.