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2016 ; 12
(5
): 1653-66
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Illuminating drug action by network integration of disease genes: a case study of
myocardial infarction
#MMPMID27004607
Wang RS
; Loscalzo J
Mol Biosyst
2016[Apr]; 12
(5
): 1653-66
PMID27004607
show ga
Drug discovery has produced many successful therapeutic agents; however, most of
these drugs were developed without a deep understanding of the system-wide
mechanisms of action responsible for their indications. Gene-disease associations
produced by molecular and genetic studies of complex diseases provide great
opportunities for a system-level understanding of drug activity. In this study,
we focused on acute myocardial infarction (MI) and conducted an integrative
network analysis to illuminate drug actions. We integrated MI drugs, MI drug
interactors, drug targets, and MI disease genes into the human interactome and
showed that MI drug targets are significantly proximate to MI disease proteins.
We then constructed a bipartite network of MI-related drug targets and MI disease
proteins and derived 12 drug-target-disease (DTD) modules. We assessed the
biological relevance of these modules and demonstrated the benefits of
incorporating disease genes. The results indicate that DTD modules provide
insights into the mechanisms of action of MI drugs and the cardiovascular (side)
effects of non-MI drugs.
|*Computational Biology/methods
[MESH]
|*Models, Biological
[MESH]
|Algorithms
[MESH]
|Drug-Related Side Effects and Adverse Reactions
[MESH]