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2016 ; 11
(3
): 782-91
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Bioorthogonal Chemistry for the Isolation and Study of Newly Synthesized Histones
and Their Modifications
#MMPMID26789204
Arnaudo AM
; Link AJ
; Garcia BA
ACS Chem Biol
2016[Mar]; 11
(3
): 782-91
PMID26789204
show ga
The nucleosome is an octamer containing DNA wrapped around one histone H3-H4
tetramer and two histone H2A-H2B dimers. Within the nucleosome, histones are
decorated with post-translational modifications. Previous studies indicate that
the H3-H4 tetramer is conserved during DNA replication, suggesting that old
tetramers serve as a template for the modification of newly synthesized
tetramers. Here, we present a method that merges bioorthogonal chemistry with
mass spectrometry for the study of modifications on newly synthesized histones in
mammalian cells. HeLa S3 cells are dually labeled with the methionine analog
azidohomoalanine and heavy (13)C6,(15)N4 isotope labeled arginine. Heavy amino
acid labeling marks newly synthesized histones while azidohomoalanine
incorporation allows for their isolation using bioorthogonal ligation. Labeled
mononucleosomes were covalently linked via a copper catalyzed reaction to a
FLAG-GGR-alkyne peptide, immunoprecipitated, and subjected to mass spectrometry
for quantitative modification analysis. Mononucleosomes containing new histones
were successfully isolated using this approach. Additionally, the development of
this method highlights the potential deleterious effects of azidohomoalanine
labeling on protein PTMs and cell cycle progression, which should be considered
for future studies utilizing bioorthogonal labeling strategies in mammalian
cells.