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10.1016/j.jmb.2016.02.017

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suck abstract from ncbi


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pmid26908222
      J+Mol+Biol 2016 ; 428 (6 ): 1053-1067
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  • A Monomer of Pif1 Unwinds Double-Stranded DNA and It Is Regulated by the Nature of the Non-Translocating Strand at the 3 -End #MMPMID26908222
  • Singh SP ; Koc KN ; Stodola JL ; Galletto R
  • J Mol Biol 2016[Mar]; 428 (6 ): 1053-1067 PMID26908222 show ga
  • Using a DNA polymerase coupled assay and FRET (Förster resonance energy transfer)-based helicase assays, in this work, we show that a monomer of Saccharomyces cerevisiae Pif1 can unwind dsDNA (double-stranded DNA). The helicase activity of a Pif1 monomer is modulated by the nature of the 3'-ssDNA (single-stranded DNA) tail of the substrate and its effect on a Pif1-dependent re-winding activity that is coupled to the opening of dsDNA. We propose that, in addition to the ssDNA site on the protein that interacts with the translocating strand, Pif1 has a second site that binds the 3'-ssDNA of the substrate. Interaction of DNA with this site modulates the degree to which re-winding counteracts unwinding. Depending on the nature of the 3'-tail and the length of the duplex DNA to be unwound, this activity is sufficiently strong to mask the helicase activity of a monomer. In excess Pif1 over the DNA, the Pif1-dependent re-winding of the opened DNA strongly limits unwinding, independent of the 3'-tail. We propose that, in this case, binding of DNA to the second site is precluded and modulation of the Pif1-dependent re-winding activity is largely lost.
  • |DNA Helicases/*metabolism [MESH]
  • |DNA/*metabolism [MESH]
  • |Nucleic Acid Conformation [MESH]
  • |Protein Binding [MESH]
  • |Saccharomyces cerevisiae Proteins/*metabolism [MESH]


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