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10.1186/s12859-016-0987-8 http://scihub22266oqcxt.onion/10.1186/s12859-016-0987-8 C4802579!4802579!27000067     free     free     free Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 231.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534       BMC+Bioinformatics 2016 ; 17 (ä): ä Nephropedia Template TP {{tp|p=27000067|t=2016. A benchmark for microRNA quantification algorithms using the OpenArray platform |pdf=|usr=}}{{27000067}} gab.com Text A benchmark for microRNA quantification algorithms using the OpenArray platform JO: BMC Bioinformatics http://www.kidney.de/pget.php?&tw=1&pmid=27000067 #FOAvip Background: Several techniques have been tailored to the quantification of microRNA expression, including hybridization arrays, quantitative PCR (qPCR), and high-throughput sequencing. Each of these has certain strengths and limitations depending both on the technology itself and the algorithm used to convert raw data into expression estimates. Reliable quantification of microRNA expression is challenging in part due to the relatively low abundance and short length of the miRNAs. While substantial research has been devoted to the development of methods to quantify mRNA expression, relatively little effort has been spent on microRNA expression. Results: In this work, we focus on the Life Technologies TaqMan OpenArray? system, a qPCR-based platform to measure microRNA expression. Several algorithms currently exist to estimate expression from the raw amplification data produced by qPCR-based technologies. To assess and compare the performance of these methods, we performed a set of dilution/mixture experiments to create a benchmark data set. We also developed a suite of statistical assessments that evaluate many different aspects of performance: accuracy, precision, titration response, number of complete features, limit of detection, and data quality. The benchmark data and software are freely available via two R/Bioconductor packages, miRcomp and miRcompData. Finally, we demonstrate use of our software by comparing two widely used algorithms and providing assessments for four other algorithms. Conclusions: Benchmark data sets and software are crucial tools for the assessment and comparison of competing algorithms. We believe that the miRcomp and miRcompData packages will facilitate the development of new methodology for microRNA expression estimation. Electronic supplementary material: The online version of this article (doi:10.1186/s12859-016-0987-8) contains supplementary material, which is available to authorized users. Twit Text FOAVip A benchmark for microRNA quantification algorithms using the OpenArray platform ????BMC Bioinformatics http://www.kidney.de/pget.php?&tw=1&pmid=27000067 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=27000067 #FOAvip English Wikipedia <ref>{{Cite pmid|27000067}}</ref> A benchmark for microRNA quantification algorithms using the OpenArray platform #MMPMID27000067 McCall MN; Baras AS; Crits-Christoph A; Ingersoll R; McAlexander MA; Witwer KW; Halushka MK BMC Bioinformatics 2016[]; 17 (ä): ä PMID27000067show ga Background: Several techniques have been tailored to the quantification of microRNA expression, including hybridization arrays, quantitative PCR (qPCR), and high-throughput sequencing. Each of these has certain strengths and limitations depending both on the technology itself and the algorithm used to convert raw data into expression estimates. Reliable quantification of microRNA expression is challenging in part due to the relatively low abundance and short length of the miRNAs. While substantial research has been devoted to the development of methods to quantify mRNA expression, relatively little effort has been spent on microRNA expression. Results: In this work, we focus on the Life Technologies TaqMan OpenArray? system, a qPCR-based platform to measure microRNA expression. Several algorithms currently exist to estimate expression from the raw amplification data produced by qPCR-based technologies. To assess and compare the performance of these methods, we performed a set of dilution/mixture experiments to create a benchmark data set. We also developed a suite of statistical assessments that evaluate many different aspects of performance: accuracy, precision, titration response, number of complete features, limit of detection, and data quality. The benchmark data and software are freely available via two R/Bioconductor packages, miRcomp and miRcompData. Finally, we demonstrate use of our software by comparing two widely used algorithms and providing assessments for four other algorithms. Conclusions: Benchmark data sets and software are crucial tools for the assessment and comparison of competing algorithms. We believe that the miRcomp and miRcompData packages will facilitate the development of new methodology for microRNA expression estimation. Electronic supplementary material: The online version of this article (doi:10.1186/s12859-016-0987-8) contains supplementary material, which is available to authorized users. äA benchmark for microRNA quantification algorithms using the OpenArray(epmc).pdf DeepDyve Pubget Overpricing