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2016 ; 333
(ä): 283-294
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Immune defense is the primary function associated with the differentially
expressed genes in the cochlea following acoustic trauma
#MMPMID26520584
Yang S
; Cai Q
; Vethanayagam RR
; Wang J
; Yang W
; Hu BH
Hear Res
2016[Mar]; 333
(ä): 283-294
PMID26520584
show ga
Our previous RNA-sequencing analysis of the rat cochlear genes identified
multiple biological processes and molecular pathways in the cochlear response to
acoustic overstimulation. However, the biological processes and molecular
pathways that are common to other species have not been documented. The
identification of these common stress processes is pivotal for a better
understanding of the essential response of the cochlea to acoustic injury. Here,
we compared the RNA-sequencing data collected from mice and rats that sustained a
similar, but not identical, acoustic injury. The transcriptome analysis of
cochlear genes identified the differentially expressed genes in the mouse and rat
samples. Bioinformatics analysis revealed a marked similarity in the changes in
the biological processes between the two species, although the differentially
expressed genes did not overlap well. The common processes associated with the
differentially expressed genes are primarily associated with immunity and
inflammation, which include the immune response, response to wounding, the
defense response, chemotaxis and inflammatory responses. Moreover, analysis of
the molecular pathways showed considerable overlap between the two species. The
common pathways include cytokine-cytokine receptor interactions, the chemokine
signaling pathway, the Toll-like receptor signaling pathway, and the NOD-like
receptor signaling pathway. Further analysis of the transcriptional regulators
revealed common upstream regulators of the differentially expressed genes, and
these upstream regulators are also functionally related to the immune and
inflammatory responses. These results suggest that the immune and inflammatory
responses are the essential responses to acoustic overstimulation in the cochlea.