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2016 ; 14
(3
): e1002364
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An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity
through Multihit Host-Directed Targeting of the Sterol Pathway
#MMPMID26938778
Robertson KA
; Hsieh WY
; Forster T
; Blanc M
; Lu H
; Crick PJ
; Yutuc E
; Watterson S
; Martin K
; Griffiths SJ
; Enright AJ
; Yamamoto M
; Pradeepa MM
; Lennox KA
; Behlke MA
; Talbot S
; Haas J
; Dölken L
; Griffiths WJ
; Wang Y
; Angulo A
; Ghazal P
PLoS Biol
2016[Mar]; 14
(3
): e1002364
PMID26938778
show ga
In invertebrates, small interfering RNAs are at the vanguard of cell-autonomous
antiviral immunity. In contrast, antiviral mechanisms initiated by interferon
(IFN) signaling predominate in mammals. Whilst mammalian IFN-induced miRNA are
known to inhibit specific viruses, it is not known whether host-directed
microRNAs, downstream of IFN-signaling, have a role in mediating broad antiviral
resistance. By performing an integrative, systematic, global analysis of RNA
turnover utilizing 4-thiouridine labeling of newly transcribed RNA and
pri/pre-miRNA in IFN-activated macrophages, we identify a new
post-transcriptional viral defense mechanism mediated by miR-342-5p. On the basis
of ChIP and site-directed promoter mutagenesis experiments, we find the synthesis
of miR-342-5p is coupled to the antiviral IFN response via the IFN-induced
transcription factor, IRF1. Strikingly, we find miR-342-5p targets
mevalonate-sterol biosynthesis using a multihit mechanism suppressing the pathway
at different functional levels: transcriptionally via SREBF2,
post-transcriptionally via miR-33, and enzymatically via IDI1 and SC4MOL. Mass
spectrometry-based lipidomics and enzymatic assays demonstrate the targeting
mechanisms reduce intermediate sterol pathway metabolites and total cholesterol
in macrophages. These results reveal a previously unrecognized mechanism by which
IFN regulates the sterol pathway. The sterol pathway is known to be an integral
part of the macrophage IFN antiviral response, and we show that miR-342-5p exerts
broad antiviral effects against multiple, unrelated pathogenic viruses such
Cytomegalovirus and Influenza A (H1N1). Metabolic rescue experiments confirm the
specificity of these effects and demonstrate that unrelated viruses have
differential mevalonate and sterol pathway requirements for their replication.
This study, therefore, advances the general concept of broad antiviral defense
through multihit targeting of a single host pathway.