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pmid26958228      AMIA+Annu+Symp+Proc 2015 ; 2015 (ä): 915-24
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  • Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing #MMPMID26958228
  • Miñarro-Giménez JA; Kreuzthaler M; Schulz S
  • AMIA Annu Symp Proc 2015[]; 2015 (ä): 915-24 PMID26958228show ga
  • The identification of relevant predicates between co-occurring concepts in scientific literature databases like MEDLINE is crucial for using these sources for knowledge extraction, in order to obtain meaningful biomedical predications as subject-predicate-object triples. We consider the manually assigned MeSH indexing terms (main headings and subheadings) in MEDLINE records as a rich resource for extracting a broad range of domain knowledge. In this paper, we explore the combination of a clustering method for co-occurring concepts based on their related MeSH subheadings in MEDLINE with the use of SemRep, a natural language processing engine, which extracts predications from free text documents. As a result, we generated sets of clusters of co-occurring concepts and identified the most significant predicates for each cluster. The association of such predicates with the co-occurrences of the resulting clusters produces the list of predications, which were checked for relevance.
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