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.jpg): Failed to open stream: No such file or directory in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 117 Nat+Commun
2015 ; 6
(ä): 10069
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Capture Hi-C reveals novel candidate genes and complex long-range interactions
with related autoimmune risk loci
#MMPMID26616563
Martin P
; McGovern A
; Orozco G
; Duffus K
; Yarwood A
; Schoenfelder S
; Cooper NJ
; Barton A
; Wallace C
; Fraser P
; Worthington J
; Eyre S
Nat Commun
2015[Nov]; 6
(ä): 10069
PMID26616563
show ga
Genome-wide association studies have been tremendously successful in identifying
genetic variants associated with complex diseases. The majority of association
signals are intergenic and evidence is accumulating that a high proportion of
signals lie in enhancer regions. We use Capture Hi-C to investigate, for the
first time, the interactions between associated variants for four autoimmune
diseases and their functional targets in B- and T-cell lines. Here we report
numerous looping interactions and provide evidence that only a minority of
interactions are common to both B- and T-cell lines, suggesting interactions may
be highly cell-type specific; some disease-associated SNPs do not interact with
the nearest gene but with more compelling candidate genes (for example, FOXO1,
AZI2) often situated several megabases away; and finally, regions associated with
different autoimmune diseases interact with each other and the same promoter
suggesting common autoimmune gene targets (for example, PTPRC, DEXI and ZFP36L1).