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10.1371/journal.pgen.1005668 http://scihub22266oqcxt.onion/10.1371/journal.pgen.1005668 C4672913!4672913!26646615     free     free     free Deprecated: Implicit conversion from float 211.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534       PLoS+Genet 2015 ; 11 (12): ä Nephropedia Template TP {{tp|p=26646615|t=2015. Probing Xist RNA Structure in Cells Using Targeted Structure-Seq |pdf=|usr=}}{{26646615}} gab.com Text Probing Xist RNA Structure in Cells Using Targeted Structure-Seq JO: PLoS Genet http://www.kidney.de/pget.php?&tw=1&pmid=26646615 #FOAvip The long non-coding RNA (lncRNA) Xist is a master regulator of X-chromosome inactivation in mammalian cells. Models for how Xist and other lncRNAs function depend on thermodynamically stable secondary and higher-order structures that RNAs can form in the context of a cell. Probing accessible RNA bases can provide data to build models of RNA conformation that provide insight into RNA function, molecular evolution, and modularity. To study the structure of Xist in cells, we built upon recent advances in RNA secondary structure mapping and modeling to develop Targeted Structure-Seq, which combines chemical probing of RNA structure in cells with target-specific massively parallel sequencing. By enriching for signals from the RNA of interest, Targeted Structure-Seq achieves high coverage of the target RNA with relatively few sequencing reads, thus providing a targeted and scalable approach to analyze RNA conformation in cells. We use this approach to probe the full-length Xist lncRNA to develop new models for functional elements within Xist, including the repeat A element in the 5?-end of Xist. This analysis also identified new structural elements in Xist that are evolutionarily conserved, including a new element proximal to the C repeats that is important for Xist function. Twit Text FOAVip Probing Xist RNA Structure in Cells Using Targeted Structure-Seq ????PLoS Genet http://www.kidney.de/pget.php?&tw=1&pmid=26646615 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=26646615 #FOAvip English Wikipedia <ref>{{Cite pmid|26646615}}</ref> Probing Xist RNA Structure in Cells Using Targeted Structure-Seq #MMPMID26646615 Fang R; Moss WN; Rutenberg-Schoenberg M; Simon MD PLoS Genet 2015[Dec]; 11 (12): ä PMID26646615show ga The long non-coding RNA (lncRNA) Xist is a master regulator of X-chromosome inactivation in mammalian cells. Models for how Xist and other lncRNAs function depend on thermodynamically stable secondary and higher-order structures that RNAs can form in the context of a cell. Probing accessible RNA bases can provide data to build models of RNA conformation that provide insight into RNA function, molecular evolution, and modularity. To study the structure of Xist in cells, we built upon recent advances in RNA secondary structure mapping and modeling to develop Targeted Structure-Seq, which combines chemical probing of RNA structure in cells with target-specific massively parallel sequencing. By enriching for signals from the RNA of interest, Targeted Structure-Seq achieves high coverage of the target RNA with relatively few sequencing reads, thus providing a targeted and scalable approach to analyze RNA conformation in cells. We use this approach to probe the full-length Xist lncRNA to develop new models for functional elements within Xist, including the repeat A element in the 5?-end of Xist. This analysis also identified new structural elements in Xist that are evolutionarily conserved, including a new element proximal to the C repeats that is important for Xist function. äProbing Xist RNA Structure in Cells Using Targeted Structure-Seq (epmc).pdf DeepDyve Pubget Overpricing