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10.1093/nar/gkv826

http://scihub22266oqcxt.onion/10.1093/nar/gkv826
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C4666386!4666386!26400177
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suck abstract from ncbi


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pmid26400177      Nucleic+Acids+Res 2015 ; 43 (21): 10506-14
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  • Xanthine and 8-oxoguanine in G-quadruplexes: formation of a G·G·X·O tetrad #MMPMID26400177
  • Cheong VV; Heddi B; Lech CJ; Phan AT
  • Nucleic Acids Res 2015[Dec]; 43 (21): 10506-14 PMID26400177show ga
  • G-quadruplexes are four-stranded structures built from stacked G-tetrads (G·G·G·G), which are planar cyclical assemblies of four guanine bases interacting through Hoogsteen hydrogen bonds. A G-quadruplex containing a single guanine analog substitution, such as 8-oxoguanine (O) or xanthine (X), would suffer from a loss of a Hoogsteen hydrogen bond within a G-tetrad and/or potential steric hindrance. We show that a proper arrangement of O and X bases can reestablish the hydrogen-bond pattern within a G·G·X·O tetrad. Rational incorporation of G·G·X·O tetrads in a (3+1) G-quadruplex demonstrated a similar folding topology and thermal stability to that of the unmodified G-quadruplex. pH titration conducted on X·O-modified G-quadruplexes indicated a protonation-deprotonation equilibrium of X with a pKa ?6.7. The solution structure of a G-quadruplex containing a G·G·X·O tetrad was determined, displaying the same folding topology in both the protonated and deprotonated states. A G-quadruplex containing a deprotonated X·O pair was shown to exhibit a more electronegative groove compared to that of the unmodified one. These differences are likely to manifest in the electronic properties of G-quadruplexes and may have important implications for drug targeting and DNA-protein interactions.
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