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10.1093/bioinformatics/btv407 http://scihub22266oqcxt.onion/10.1093/bioinformatics/btv407 C4626748!4626748!26153515     free     free     free Warning: file_get_contents(https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=26153515&cmd=llinks): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 215 Deprecated: Implicit conversion from float 213.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 213.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534 Deprecated: Implicit conversion from float 213.6 to int loses precision in C:\Inetpub\vhosts\kidney.de\httpdocs\pget.php on line 534       Bioinformatics 2015 ; 31 (21): 3522-8 Nephropedia Template TP {{tp|p=26153515|t=2015. LayerCake: a tool for the visual comparison of viral deep sequencing data |pdf=|usr=}}{{26153515}} gab.com Text LayerCake: a tool for the visual comparison of viral deep sequencing data JO: Bioinformatics http://www.kidney.de/pget.php?&tw=1&pmid=26153515 #FOAvip Motivation: The advent of next-generation sequencing (NGS) has created unprecedented opportunities to examine viral populations within individual hosts, among infected individuals and over time. Comparing sequence variability across viral genomes allows for the construction of complex population structures, the analysis of which can yield powerful biological insights. However, the simultaneous display of sequence variation, coverage depth and quality scores across thousands of bases presents a unique visualization challenge that has not been fully met by current NGS analysis tools.Results: Here, we present LayerCake, a self-contained visualization tool that allows for the rapid analysis of variation in viral NGS data. LayerCake enables the user to simultaneously visualize variations in multiple viral populations across entire genomes within a highly customizable framework, drawing attention to pertinent and interesting patterns of variation. We have successfully deployed LayerCake to assist with a variety of different genomics datasets.Availability and implementation: Program downloads and detailed instructions are available at http://graphics.cs.wisc.edu/WP/layercake under a modified MIT license. LayerCake is a cross-platform tool written in the Processing framework for Java.Contact:mcorrell@cs.wisc.edu Twit Text FOAVip LayerCake: a tool for the visual comparison of viral deep sequencing data ????Bioinformatics http://www.kidney.de/pget.php?&tw=1&pmid=26153515 #FOAvip Twit Text # Free Paper on # # # # # LINK http://www.kidney.de/pget.php?&tw=1&pmid=26153515 #FOAvip English Wikipedia <ref>{{Cite pmid|26153515}}</ref> LayerCake: a tool for the visual comparison of viral deep sequencing data #MMPMID26153515 Correll M; Bailey AL; Sarikaya A; O?Connor DH; Gleicher M Bioinformatics 2015[Nov]; 31 (21): 3522-8 PMID26153515show ga Motivation: The advent of next-generation sequencing (NGS) has created unprecedented opportunities to examine viral populations within individual hosts, among infected individuals and over time. Comparing sequence variability across viral genomes allows for the construction of complex population structures, the analysis of which can yield powerful biological insights. However, the simultaneous display of sequence variation, coverage depth and quality scores across thousands of bases presents a unique visualization challenge that has not been fully met by current NGS analysis tools.Results: Here, we present LayerCake, a self-contained visualization tool that allows for the rapid analysis of variation in viral NGS data. LayerCake enables the user to simultaneously visualize variations in multiple viral populations across entire genomes within a highly customizable framework, drawing attention to pertinent and interesting patterns of variation. We have successfully deployed LayerCake to assist with a variety of different genomics datasets.Availability and implementation: Program downloads and detailed instructions are available at http://graphics.cs.wisc.edu/WP/layercake under a modified MIT license. LayerCake is a cross-platform tool written in the Processing framework for Java.Contact:mcorrell@cs.wisc.edu äLayerCake: a tool for the visual comparison of viral deep sequencing d(epmc).pdf DeepDyve Pubget Overpricing