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2015 ; 5
(ä): 15587
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High-throughput genotyping of CRISPR/Cas9-mediated mutants using fluorescent
PCR-capillary gel electrophoresis
#MMPMID26498861
Ramlee MK
; Yan T
; Cheung AM
; Chuah CT
; Li S
Sci Rep
2015[Oct]; 5
(ä): 15587
PMID26498861
show ga
Recent advances in the engineering of sequence-specific synthetic nucleases
provide enormous opportunities for genetic manipulation of gene expression in
order to study their cellular function in vivo. However, current genotyping
methods to detect these programmable nuclease-induced insertion/deletion (indel)
mutations in targeted human cells are not compatible for high-throughput
screening of knockout clones due to inherent limitations and high cost. Here, we
describe an efficient method of genotyping clonal CRISPR/Cas9-mediated mutants in
a high-throughput manner involving the use of a direct lysis buffer to extract
crude genomic DNA straight from cells in culture, and fluorescent PCR coupled
with capillary gel electrophoresis. This technique also allows for genotyping of
multiplexed gene targeting in a single clone. Overall, this time- and cost-saving
technique is able to circumvent the limitations of current genotyping methods and
support high-throughput screening of nuclease-induced mutants.