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2015 ; 10
(10
): e0141042
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Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and
Competing Endogenous RNA Potential in Hepatocellular Carcinoma
#MMPMID26492393
Zhang J
; Fan D
; Jian Z
; Chen GG
; Lai PB
PLoS One
2015[]; 10
(10
): e0141042
PMID26492393
show ga
Long noncoding RNAs (lncRNAs) regulate gene expression by acting with microRNAs
(miRNAs). However, the roles of cancer specific lncRNA and its related
competitive endogenous RNAs (ceRNA) network in hepatocellular cell carcinoma
(HCC) are not fully understood. The lncRNA profiles in 372 HCC patients,
including 372 tumor and 48 adjacent non-tumor liver tissues, from The Cancer
Genome Atlas (TCGA) and NCBI GEO omnibus (GSE65485) were analyzed. Cancer
specific lncRNAs (or HCC related lncRNAs) were identified and correlated with
clinical features. Based on bioinformatics generated from miRcode, starBase, and
miRTarBase, we constructed an lncRNA-miRNA-mRNA network (ceRNA network) in HCC.
We found 177 cancer specific lncRNAs in HCC (fold change ? 1.5, P < 0.01), 41 of
them were also discriminatively expressed with gender, race, tumor grade, AJCC
tumor stage, and AJCC TNM staging system. Six lncRNAs (CECR7, LINC00346,
MAPKAPK5-AS1, LOC338651, FLJ90757, and LOC283663) were found to be significantly
associated with overall survival (OS, log-rank P < 0.05). Collectively, our
results showed the lncRNA expression patterns and a complex ceRNA network in HCC,
and identified a complex cancer specific ceRNA network, which includes 14 lncRNAs
and 17 miRNAs in HCC.