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10.1016/j.immuni.2013.05.011

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suck abstract from ncbi


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pmid23791644
      Immunity 2013 ; 38 (6 ): 1271-84
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  • Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization #MMPMID23791644
  • Hawkins RD ; Larjo A ; Tripathi SK ; Wagner U ; Luu Y ; Lönnberg T ; Raghav SK ; Lee LK ; Lund R ; Ren B ; Lähdesmäki H ; Lahesmaa R
  • Immunity 2013[Jun]; 38 (6 ): 1271-84 PMID23791644 show ga
  • Naive CD4? T cells can differentiate into specific helper and regulatory T cell lineages in order to combat infection and disease. The correct response to cytokines and a controlled balance of these populations is critical for the immune system and the avoidance of autoimmune disorders. To investigate how early cell-fate commitment is regulated, we generated the first human genome-wide maps of histone modifications that reveal enhancer elements after 72 hr of in vitro polarization toward T helper 1 (Th1) and T helper 2 (Th2) cell lineages. Our analysis indicated that even at this very early time point, cell-specific gene regulation and enhancers were at work directing lineage commitment. Further examination of lineage-specific enhancers identified transcription factors (TFs) with known and unknown T cell roles as putative drivers of lineage-specific gene expression. Lastly, an integrative analysis of immunopathogenic-associated SNPs suggests a role for distal regulatory elements in disease etiology.
  • |Cell Differentiation/genetics [MESH]
  • |Cell Lineage/genetics [MESH]
  • |Chromatin/*metabolism [MESH]
  • |Genetic Predisposition to Disease [MESH]
  • |Genome-Wide Association Study [MESH]
  • |Histones/genetics/*metabolism [MESH]
  • |Humans [MESH]
  • |Immune System Diseases/genetics/*immunology [MESH]
  • |Polymorphism, Single Nucleotide [MESH]
  • |Promoter Regions, Genetic [MESH]
  • |Th1 Cells/*immunology [MESH]
  • |Th1-Th2 Balance [MESH]


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